Package: GenomeInfoDb
Title: Utilities for manipulating chromosome names, including modifying
        them to follow a particular naming style
Description: Contains data and functions that define and allow
        translation between different chromosome sequence naming
        conventions (e.g., "chr1" versus "1"), including a function
        that attempts to place sequence names in their natural, rather
        than lexicographic, order.
biocViews: Genetics, DataRepresentation, Annotation, GenomeAnnotation
URL: https://bioconductor.org/packages/GenomeInfoDb
Video: http://youtu.be/wdEjCYSXa7w
BugReports: https://github.com/Bioconductor/GenomeInfoDb/issues
Version: 1.49.1
License: Artistic-2.0
Encoding: UTF-8
Authors@R: c(
	person("Sonali", "Arora", role="aut"),
	person("Martin", "Morgan", role="aut"),
	person("Marc", "Carlson", role="aut"),
	person("Hervé", "Pagès", role=c("aut", "cre"),
		email="hpages.on.github@gmail.com"),
	person("Prisca Chidimma", "Maduka", role="ctb"),
	person("Atuhurira Kirabo", "Kakopo", role="ctb"),
	person("Haleema", "Khan", role="ctb",
		comment="vignette translation from Sweave to Rmarkdown / HTML"),
	person("Emmanuel Chigozie", "Elendu", role="ctb"))
Depends: R (>= 4.0.0), methods, BiocGenerics (>= 0.59.3), S4Vectors (>=
        0.47.6), IRanges (>= 2.41.1), Seqinfo (>= 0.99.2)
Imports: stats, utils, UCSC.utils
Suggests: GenomeInfoDbData, R.utils, data.table, GenomicRanges,
        Rsamtools, GenomicAlignments, BSgenome, GenomicFeatures,
        TxDb.Dmelanogaster.UCSC.dm3.ensGene,
        BSgenome.Scerevisiae.UCSC.sacCer2, BSgenome.Celegans.UCSC.ce2,
        BSgenome.Hsapiens.NCBI.GRCh38, RUnit, BiocStyle, knitr
VignetteBuilder: knitr
Collate: utils.R fetch_table_dump_from_Ensembl_FTP.R list_ftp_dir.R
        NCBI-utils.R UCSC-utils.R Ensembl-utils.R
        getChromInfoFromNCBI.R getChromInfoFromUCSC.R
        getChromInfoFromEnsembl.R loadTaxonomyDb.R mapGenomeBuilds.R
        seqlevelsStyle.R seqlevels-wrappers.R zzz.R
Config/pak/sysreqs: libssl-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-05-22 18:46:20 UTC
RemoteUrl: https://github.com/bioc/GenomeInfoDb
RemoteRef: HEAD
RemoteSha: 037c38473a4c01b798a442cfbe4c47f49cd29120
NeedsCompilation: no
Packaged: 2026-06-21 10:54:43 UTC; root
Author: Sonali Arora [aut],
  Martin Morgan [aut],
  Marc Carlson [aut],
  Hervé Pagès [aut, cre],
  Prisca Chidimma Maduka [ctb],
  Atuhurira Kirabo Kakopo [ctb],
  Haleema Khan [ctb] (vignette translation from Sweave to Rmarkdown /
    HTML),
  Emmanuel Chigozie Elendu [ctb]
Maintainer: Hervé Pagès <hpages.on.github@gmail.com>