Package: GenomAutomorphism Title: Compute the automorphisms between DNA's Abelian group representations Version: 1.15.0 Authors@R: person( given = "Robersy", family = "Sanchez", role = c("aut", "cre"), email = "genomicmath@gmail.com", comment = c(ORCID = "0000-0002-5246-1453")) URL: https://github.com/genomaths/GenomAutomorphism BugReports: https://github.com/genomaths/GenomAutomorphism/issues Description: This is a R package to compute the automorphisms between pairwise aligned DNA sequences represented as elements from a Genomic Abelian group. In a general scenario, from genomic regions till the whole genomes from a given population (from any species or close related species) can be algebraically represented as a direct sum of cyclic groups or more specifically Abelian p-groups. Basically, we propose the representation of multiple sequence alignments of length N bp as element of a finite Abelian group created by the direct sum of homocyclic Abelian group of prime-power order. Depends: R (>= 4.4.0), License: Artistic-2.0 Encoding: UTF-8 biocViews: MathematicalBiology, ComparativeGenomics, FunctionalGenomics, MultipleSequenceAlignment, WholeGenome Imports: Biostrings, BiocGenerics, BiocParallel, Seqinfo, GenomicRanges, IRanges, matrixStats, XVector, dplyr, data.table, parallel, doParallel, foreach, methods, S4Vectors, stats, numbers, utils RoxygenNote: 7.3.2 Suggests: spelling, rmarkdown, BiocStyle, testthat (>= 3.0.0), knitr Roxygen: list(markdown = TRUE) Language: en-US LazyData: false Config/testthat/edition: 3 VignetteBuilder: knitr Config/pak/sysreqs: zlib1g-dev Repository: https://bioc.r-universe.dev Date/Publication: 2026-04-28 12:58:46 UTC RemoteUrl: https://github.com/bioc/GenomAutomorphism RemoteRef: HEAD RemoteSha: 34d8013455723cf11bc1b6c548fefc8e46ee9b8d NeedsCompilation: no Packaged: 2026-05-30 08:14:35 UTC; root Author: Robersy Sanchez [aut, cre] (ORCID: ) Maintainer: Robersy Sanchez