Package: GSEABenchmarkeR
Type: Package
Title: Reproducible GSEA Benchmarking
Version: 1.33.1
Authors@R: c(
    person("Ludwig", "Geistlinger", , "ludwig.geistlinger@gmail.com", role = c("aut", "cre")),
    person("Gergely", "Csaba", role = "aut"),
    person("Mara", "Santarelli", role = "ctb"),
    person("Lucas", "Schiffer", role = "ctb"),
    person("Marcel", "Ramos", role = "ctb"),
    person("Ralf", "Zimmer", role = "aut"),
    person("Levi", "Waldron", role = "aut"),
    person("NCI", role = "fnd",
           comment = c(GrantNo. = "U24CA289073"))
  )
Description: The GSEABenchmarkeR package implements an extendable
        framework for reproducible evaluation of set- and network-based
        methods for enrichment analysis of gene expression data. This
        includes support for the efficient execution of these methods
        on comprehensive real data compendia (microarray and RNA-seq)
        using parallel computation on standard workstations and
        institutional computer grids. Methods can then be assessed with
        respect to runtime, statistical significance, and relevance of
        the results for the phenotypes investigated.
URL: https://github.com/waldronlab/GSEABenchmarkeR
BugReports: https://github.com/waldronlab/GSEABenchmarkeR/issues
License: Artistic-2.0
Encoding: UTF-8
Depends: R (>= 4.5.0), Biobase, SummarizedExperiment
Imports: AnnotationDbi, AnnotationHub, BiocFileCache, BiocParallel,
        edgeR, EnrichmentBrowser, ExperimentHub, grDevices, graphics,
        KEGGandMetacoreDzPathwaysGEO, KEGGdzPathwaysGEO, methods,
        S4Vectors, stats, utils
Suggests: BiocStyle, GSE62944, knitr, rappdirs, rmarkdown
biocViews: ImmunoOncology, Microarray, RNASeq, GeneExpression,
        DifferentialExpression, Pathways, GraphAndNetwork, Network,
        GeneSetEnrichment, NetworkEnrichment, Visualization,
        ReportWriting
VignetteBuilder: knitr
RoxygenNote: 7.1.0
Config/pak/sysreqs: make libicu-dev libpng-dev libxml2-dev libssl-dev
        zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-05-14 21:16:21 UTC
RemoteUrl: https://github.com/bioc/GSEABenchmarkeR
RemoteRef: HEAD
RemoteSha: 21b3ef8ac091f8d7864bc94a32ff828a45b5754f
NeedsCompilation: no
Packaged: 2026-06-14 10:07:19 UTC; root
Author: Ludwig Geistlinger [aut, cre],
  Gergely Csaba [aut],
  Mara Santarelli [ctb],
  Lucas Schiffer [ctb],
  Marcel Ramos [ctb],
  Ralf Zimmer [aut],
  Levi Waldron [aut],
  NCI [fnd] (GrantNo.: U24CA289073)
Maintainer: Ludwig Geistlinger <ludwig.geistlinger@gmail.com>