| Title: | GEO accession data GSE62944 as a SummarizedExperiment |
|---|---|
| Description: | TCGA processed RNA-Seq data for 9264 tumor and 741 normal samples across 24 cancer types and made them available as GEO accession [GSE62944](http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE62944). GSE62944 data have been parsed into a SummarizedExperiment object available in ExperimentHub. |
| Authors: | Sonali Arora |
| Maintainer: | Bioconductor Package Maintainer <[email protected]> |
| License: | Artistic-2.0 |
| Version: | 1.41.0 |
| Built: | 2026-10-10 10:37:45 UTC |
| Source: | https://github.com/bioc/GSE62944 |
ExpressionSet object.TCGA re-processed RNA-Seq data from 9264 Tumor Samples and 741 normal
samples across 24 cancer types and made it available as GEO
accession
[GSE62944](http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE62944).
These data have been parsed into a SummarizedExperiment objects and
are available in ExperimentHub.
See the vignette for examples of using these data in differential gene expression analysis.
browseVignettes("GSE62944")
Details of how these data were creates are in the scripts/ directory of the source package.
library(ExperimentHub) hub <- ExperimentHub() x <- query(hub, c("GSE62944", "tumor")) x y <- query(hub, c("GSE62944", "normal")) y ## Not run: ## download resource se_tumor = x[[1]] se_normal = y[[1]] ## End(Not run)library(ExperimentHub) hub <- ExperimentHub() x <- query(hub, c("GSE62944", "tumor")) x y <- query(hub, c("GSE62944", "normal")) y ## Not run: ## download resource se_tumor = x[[1]] se_normal = y[[1]] ## End(Not run)