Version: 0.99.0
Category: Initial package submitted
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Version: 0.99.2
Category: Codes
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Version: 0.99.2
Category: Added calls to match.args() for partial matching
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Version: 0.99.2
Category: Added calls to isTRUE() for checking logical inputs
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Version: 0.99.2
Category: Replaces cat() with message
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Version: 0.99.2
Category: Vignette
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Version: 0.99.2
Category: Tabs are replaced by spaces
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Version: 0.99.2
Category: Added some math notations
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Version: 0.99.2
Category: R Dependency
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Version: 0.99.2
Category: Package built using R-devel version 3.3.0
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Version: 0.99.2
Category: R Dependecy updated to R (>= 3.3.0) in preparation for next
        Bioconductor release
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Version: 0.99.3
Category: Codes
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Version: 0.99.3
Category: All comments removed
Text: ' \n' are removed at end of messages, or the space before '\n'
        are removed.

Version: 1.1.1
Category: Codes
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Version: 1.1.1
Category: Added “maxmean” statistics
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Version: 1.1.1
Category: Added “wilcoxTest” for Mann-Whitney-U tests for single gene
        analysis
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Version: 1.1.1
Category: Default for GSALight() is now “maxmean” with
        restandardization
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Version: 1.1.1
Category: Fix some issues to make GSALight() equivalent to GSA of Efron
        and Tibshirani
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Version: 1.1.1
Category: The target gene list is now a list instead of a data table
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Version: 1.1.1
Category: The Vignette now contains a comprehensive user guide
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Version: 1.1.1
Category: All documentations are updated accordingly
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Version: 1.1.2
Category: Added “importFrom("stats", "p.adjust", "rbinom", "var",
        "wilcox.test”)” to NAMESPACE
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Version: 1.1.2
Category: Import “stats” in description
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Version: 1.1.2
Category: Added back manual for “wilcoxTest
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Version: 1.1.3
Category: Bioconductor version updates
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Version: 1.1.5
Category: Updated references and manual and vignette
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Version: 1.1.5
Category: Added Github URL
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Version: 1.1.6
Category: Fixed default settings of permTestLight() by adding
        match.args and setting nperm=NULL
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