Package: GSABenchmark Type: Package Title: Tools for benchmarking single-cell gene set analysis methods Version: 1.1.2 Authors@R: person('Andrei-Florian', 'Stoica', email='andreistoica@foxmail.com', role=c('aut','cre'), comment=c(ORCID='0000-0002-5253-0826')) Description: GSABenchmark is a package designed for benchmarking scRNA-seq gene set analysis (scGSA) methods. It provides both traditional and novel benchmark metrics, as well as visualization tools. Currently, GSABenchmark supports 17 scGSA methods (AddModuleScore, AUCell, CSOA, GSVA, JASMINE, MDT, MLM, ORA, Pagoda2, PLAGE, Singscore, SiPSiC, ssGSEA, UCell, UDT, VAM, and Zscore). License: MIT + file LICENSE Imports: abdiv, CSOA, decoupleR, dplyr, escape, fabR, ggplot2, ggrepel, GSVA, hammers, henna, jaccard, lsa, Matrix, MLmetrics, methods, mltools, pagoda2, paletteer, reshape2, rlang, scLang, singscore, SiPSiC, stringr, stats, VAM, withr Encoding: UTF-8 RoxygenNote: 7.3.3 Suggests: AUCell, BiocStyle, knitr, qs2, ranger, rmarkdown, rpart, scater, scRNAseq, scuttle, Seurat, testthat (>= 3.0.0), UCell biocViews: Software, SingleCell, GeneSetEnrichment, GeneExpression, Visualization VignetteBuilder: knitr URL: https://github.com/andrei-stoica26/GSABenchmark BugReports: https://github.com/andrei-stoica26/GSABenchmark/issues Config/testthat/edition: 3 Config/pak/sysreqs: cmake libfontconfig1-dev libfreetype6-dev git libglpk-dev make libmagick++-dev gsfonts libgit2-dev libicu-dev libpng-dev libuv1-dev libxml2-dev libssl-dev python3 libx11-dev zlib1g-dev Repository: https://bioc.r-universe.dev Date/Publication: 2026-07-26 04:32:06 UTC RemoteUrl: https://github.com/bioc/GSABenchmark RemoteRef: HEAD RemoteSha: 2e7d1881054aa925a96a28c0a95be62f864385e7 NeedsCompilation: no Packaged: 2026-11-04 09:08:09 UTC; root Author: Andrei-Florian Stoica [aut, cre] (ORCID: ) Maintainer: Andrei-Florian Stoica