To cite package ‘GRaNIE’ in publications use:

Arnold C, Zaugg J, Moussa R (2026). GRaNIE: GRaNIE: Reconstruction cell type specific gene regulatory networks including enhancers using single-cell or bulk chromatin accessibility and RNA-seq data. R package version 1.17.0, https://bioconductor.org/packages/GRaNIE.

Corresponding BibTeX entry:

  @Manual{,
    title = {GRaNIE: GRaNIE: Reconstruction cell type specific gene
      regulatory networks including enhancers using single-cell or bulk
      chromatin accessibility and RNA-seq data},
    author = {Christian Arnold and Judith Zaugg and Rim Moussa},
    year = {2026},
    note = {R package version 1.17.0},
    url = {https://bioconductor.org/packages/GRaNIE},
  }