NEWS

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GPA 1.1.0

• Made the following significant changes
• Incorporate ShinyGPA developed by Emma Kortemeier as a part of the R package.
• Add fitAll() to fit GPA models for possible pairs of phenotypes.
• Add shinyGPA() to open the shiny app for the interactive pleiotropy visualization.

GPA 0.99.9 (2020-04-14)

• Formatted package for Bioconductor. Changes include:
• Added runnable examples
• Reformatted source code to match Bioconductor practices

GPA 0.9.3

• Made the following significant changes
• Incorporate R package vignette.
• assoc(), fdr(): allows association mapping & local FDR for specific association status.
• aTest(), pTest(): message() was replaced with cat().

GPA 0.9.2

• Made the following significant changes
• Add se() to provide parameter estimates and their standard errors.

GPA 0.9.1

• Made the following significant changes
• Add fdr() to provide local FDR that a SNP is not associated with each phenotype.
• Add assoc() for association mapping.
• The function aTest() and methods show() and cov() for class 'GPA' now provide estimates and standard error for the ratio of q in each association class over the baseline.
• In GPA(), 'initBetaMean' argument is replaced with 'initBetaAlpha'.
• Generally improve robustness of functions by checking input for arguments.

GPA 0.9.0

• The first version of GPA R package.