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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "GOexpress" in publications use:'
type: software
license: GPL-3.0-or-later
title: 'GOexpress: Visualise microarray and RNAseq data using gene ontology annotations'
version: 1.39.0
doi: 10.32614/CRAN.package.GOexpress
abstract: The package contains methods to visualise the expression profile of genes
  from a microarray or RNA-seq experiment, and offers a supervised clustering approach
  to identify GO terms containing genes with expression levels that best classify
  two or more predefined groups of samples. Annotations for the genes present in the
  expression dataset may be obtained from Ensembl through the biomaRt package, if
  not provided by the user. The default random forest framework is used to evaluate
  the capacity of each gene to cluster samples according to the factor of interest.
  Finally, GO terms are scored by averaging the rank (alternatively, score) of their
  respective gene sets to cluster the samples. P-values may be computed to assess
  the significance of GO term ranking. Visualisation function include gene expression
  profile, gene ontology-based heatmaps, and hierarchical clustering of experimental
  samples using gene expression data.
authors:
- family-names: Rue-Albrecht
  given-names: Kevin
  email: kevinrue67@gmail.com
repository: https://bioc.r-universe.dev
repository-code: https://github.com/kevinrue/GOexpress
commit: a8aa3795597415cc4014448db5cdd6a80b0172a7
url: https://github.com/kevinrue/GOexpress
date-released: '2017-04-04'
contact:
- family-names: Rue-Albrecht
  given-names: Kevin
  email: kevinrue67@gmail.com