NEWS

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GEOquery 2.99.0 (2024-10-01)

New Features

• RNAseq data support for GEOquery. Now you can use RNASeq quantification data prepared by NCBI.
• Basic search in GEO database. Now you can search for datasets in GEO database using GEOquery.
• browseGEO() function to open a web browser with a GEO accession.

Breaking changes

• getGEO() now returns a list of SummarizedExperiment objects. This is a breaking change from previous versions of GEOquery. If you are using GEOquery in a script, you will need to update your code to reflect this change.

Bug Fixes or Improvements

Not an exhaustive list, but some highlights:

• Using httr2 instead of curl for better control over HTTP requests.
• Removed dead gunzip code.