Package: GEOfastq
Type: Package
Title: Downloads ENA Fastqs With GEO Accessions
Version: 1.21.0
Authors@R: person("Alex", "Pickering", email="alexvpickering@gmail.com", 
                  role=c("cre", "aut"), 
                  comment = c(ORCID = "0000-0002-0002-6759"))
Description: GEOfastq is used to download fastq files from the European
        Nucleotide Archive (ENA) starting with an accession from the
        Gene Expression Omnibus (GEO). To do this, sample metadata is
        retrieved from GEO and the Sequence Read Archive (SRA). SRA run
        accessions are then used to construct FTP and aspera download
        links for fastq files generated by the ENA.
License: MIT + file LICENSE
Encoding: UTF-8
RoxygenNote: 7.1.1
BugReports: https://github.com/alexvpickering/GEOfastq/issues
Imports: xml2, rvest, stringr, RCurl, doParallel, foreach, plyr
Suggests: BiocCheck, roxygen2, knitr, rmarkdown, testthat
biocViews: RNASeq, DataImport
VignetteBuilder: knitr
Config/pak/sysreqs: make libicu-dev libxml2-dev libssl-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-04-28 12:54:38 UTC
RemoteUrl: https://github.com/bioc/GEOfastq
RemoteRef: HEAD
RemoteSha: b16140106c9441ca126dbc49f92489589df04a94
NeedsCompilation: no
Packaged: 2026-07-04 13:30:16 UTC; root
Author: Alex Pickering [cre, aut] (ORCID:
    <https://orcid.org/0000-0002-0002-6759>)
Maintainer: Alex Pickering <alexvpickering@gmail.com>