Package: FlowSOM
Version: 2.21.0
Date: 2026-03-17
Title: Using self-organizing maps for visualization and interpretation
        of cytometry data
Authors@R: c(person("Sofie", "Van Gassen", role = c("aut", "cre"),
            email = "sofie.vangassen@ugent.be"),
            person("Artuur", "Couckuyt", role = c("aut"),
            email = "artuur.couckuyt@ugent.be"),
            person("Katrien", "Quintelier", role = c("aut"),
            email = "katrienL.Quintelier@ugent.be"),
            person("Annelies", "Emmaneel", role = c("aut"),
            email = "annelies.emmaneel@ugent.be"),
            person("Sarah", "Bonte", role = c("aut"),
            email = "sarahM.bonte@ugent.be"),
            person("Robbe", "Fonteyn", role = c("aut"),
            email = "robbe.fonteyn@ugent.be"),
            person("Britt","Callebaut",role="aut",
            email="britt.callebaut@ugent.be"),
            person("Yvan", "Saeys", role = "aut", 
            email="yvan.saeys@ugent.be"))
Depends: R (>= 4.5), igraph
Imports: stats, utils, colorRamps, ConsensusClusterPlus, dplyr,
        flowCore, ggforce, ggnewscale, ggplot2, ggpubr, grDevices,
        magrittr, methods, rlang, Rtsne, tidyr, BiocGenerics, XML
Suggests: BiocStyle, testthat, CytoML, flowWorkspace, ggrepel,
        scattermore, pheatmap, ggpointdensity, ComplexHeatmap
Description: FlowSOM offers visualization options for cytometry data,
        by using Self-Organizing Map clustering and Minimal Spanning
        Trees.
License: GPL (>= 2)
URL: http://www.r-project.org, http://dambi.ugent.be
biocViews: CellBiology, FlowCytometry, Clustering, Visualization,
        Software, CellBasedAssays
Packaged: 2026-06-23 15:34:31 UTC; root
RoxygenNote: 7.3.3
Encoding: UTF-8
Config/pak/sysreqs: cmake libfontconfig1-dev libfreetype6-dev
        libglpk-dev make libicu-dev libxml2-dev libssl-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-04-28 12:40:20 UTC
RemoteUrl: https://github.com/bioc/FlowSOM
RemoteRef: HEAD
RemoteSha: 597547177b7bbd7907d984d5bcb9a1dc4a27f2f0
NeedsCompilation: yes
Author: Sofie Van Gassen [aut, cre],
  Artuur Couckuyt [aut],
  Katrien Quintelier [aut],
  Annelies Emmaneel [aut],
  Sarah Bonte [aut],
  Robbe Fonteyn [aut],
  Britt Callebaut [aut],
  Yvan Saeys [aut]
Maintainer: Sofie Van Gassen <sofie.vangassen@ugent.be>