Package: Fancy
Type: Package
Title: Frequency and Nonlinear Correlation Hybrid Network Inference
Version: 0.99.4
Authors@R: person(
    given = "Wanxin",
    family = "Lai",
    role = c("aut", "cre"),
    email = "wanxin.graceca@gmail.com",
    comment = c(ORCID = "0009-0000-1607-2453"))
URL: https://github.com/wala-github/Fancy
BugReports: https://github.com/wala-github/Fancy/issues
Description: Infers microbial co-abundance networks by combining mutual
        information (via MRNET) and distance correlation into a single
        hybrid edge score. Bootstrap resampling provides
        frequency-based confidence, and a weighted scoring function
        ranks edges for downstream module analysis. Designed for
        metagenome-assembled genome (MAG) count tables.
License: GPL (>= 3)
Encoding: UTF-8
LazyData: true
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.3
Depends: R (>= 4.5.0)
Imports: minet, compositions, energy, knnmi, snowfall, methods, dplyr,
        tidyr, purrr, readr, rlang, tibble, stringr, graphics, stats,
        utils
Suggests: BiocStyle, knitr, rmarkdown, testthat (>= 3.0.0), ggplot2,
        igraph, magick
biocViews: NetworkInference, Network, Metagenomics, Microbiome,
        StatisticalMethod
VignetteBuilder: knitr
Config/testthat/edition: 3
Config/pak/sysreqs: libgsl0-dev libicu-dev libx11-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-06-29 12:54:22 UTC
RemoteUrl: https://github.com/bioc/Fancy
RemoteRef: HEAD
RemoteSha: 68202588006a4892aafa1a74833acc8ad9faced7
NeedsCompilation: no
Packaged: 2026-10-10 13:27:12 UTC; root
Author: Wanxin Lai [aut, cre] (ORCID: <https://orcid.org/0009-0000-1607-2453>)
Maintainer: Wanxin Lai <wanxin.graceca@gmail.com>