# --------------------------------------------
# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
# --------------------------------------------
 
cff-version: 1.2.0
message: 'To cite package "FLAMES" in publications use:'
type: software
license: GPL-3.0-or-later
title: 'FLAMES: FLAMES: Full Length Analysis of Mutations and Splicing in long read
  RNA-seq data'
version: 1.11.3
doi: 10.1186/s13059-021-02525-6
identifiers:
- type: doi
  value: 10.32614/CRAN.package.FLAMES
abstract: Semi-supervised isoform detection and annotation from both bulk and single-cell
  long read RNA-seq data. Flames provides automated pipelines for analysing isoforms,
  as well as intermediate functions for manual execution.
authors:
- family-names: Tian
  given-names: Luyi
  email: tian.l@wehi.edu.au
- family-names: Wang
  given-names: Changqing
  email: wang.ch@wehi.edu.au
- family-names: You
  given-names: Yupei
  email: you.yu@wehi.edu.au
- family-names: Voogd
  given-names: Oliver
  email: voogd.o@wehi.edu.au
- family-names: Schuster
  given-names: Jakob
  email: schuster.j@wehi.edu.au
- family-names: Su
  given-names: Shian
  email: su.s@wehi.edu.au
preferred-citation:
  type: article
  title: Comprehensive Characterization of Single-Cell Full-Length Isoforms in Human
    and Mouse with Long-Read Sequencing
  authors:
  - family-names: Tian
    given-names: Luyi
    email: tian.l@wehi.edu.au
  - family-names: Jabbari
    given-names: Jafar S
  - family-names: Thijssen
    given-names: Rachel
  - family-names: Gouil
    given-names: Quentin
  - family-names: Amarasinghe
    given-names: Shanika L
  - family-names: Voogd
    given-names: Oliver
    email: voogd.o@wehi.edu.au
  - family-names: Kariyawasam
    given-names: Hasaru
  - family-names: Du
    given-names: Mei R M
  - family-names: Schuster
    given-names: Jakob
    email: schuster.j@wehi.edu.au
  - family-names: Wang
    given-names: Changqing
    email: wang.ch@wehi.edu.au
  - family-names: Su
    given-names: Shian
    email: su.s@wehi.edu.au
  - family-names: Dong
    given-names: Xueyi
  - family-names: Law
    given-names: Charity W
  - family-names: Lucattini
    given-names: Alexis
  - family-names: Prawer
    given-names: Yair David Joseph
  - family-names: Collar-Fernández
    given-names: Coralina
  - family-names: Chung
    given-names: Jin D
  - family-names: Naim
    given-names: Timur
  - family-names: Chan
    given-names: Audrey
  - family-names: Ly
    given-names: Chi Hai
  - family-names: Lynch
    given-names: Gordon S
  - family-names: Ryall
    given-names: James G
  - family-names: Anttila
    given-names: Casey J A
  - family-names: Peng
    given-names: Hongke
  - family-names: Anderson
    given-names: Mary Ann
  - family-names: Flensburg
    given-names: Christoffer
  - family-names: Majewski
    given-names: Ian
  - family-names: Roberts
    given-names: Andrew W
  - family-names: Huang
    given-names: David C S
  - family-names: Clark
    given-names: Michael B
  - family-names: Ritchie
    given-names: Matthew E
  journal: Genome Biology
  year: '2021'
  volume: '22'
  issue: '1'
  doi: 10.1186/s13059-021-02525-6
  start: '310'
repository: https://bioc.r-universe.dev
repository-code: https://github.com/mritchielab/FLAMES
commit: 8fe9856de844721811c9198e29be8a6bfb70a919
url: https://mritchielab.github.io/FLAMES
date-released: '2023-03-27'
contact:
- family-names: Wang
  given-names: Changqing
  email: wang.ch@wehi.edu.au