Package: ExpressionNormalizationWorkflow Type: Package Title: Gene Expression Normalization Workflow Version: 1.39.0 Published: 2014-04-30 Authors@R: as.person(c( "Karthikeyan Murugesan [aut, cre]", "Greg Gibson [sad, ths]" )) Description: An extensive, customized expression normalization workflow incorporating Supervised Normalization of Microarryas(SNM), Surrogate Variable Analysis(SVA) and Principal Variance Component Analysis to identify batch effects and remove them from the expression data to enhance the ability to detect the underlying biological signals. Imports: Biobase (>= 2.24.0), limma (>= 3.20.9), lme4 (>= 1.1.7), matrixStats (>= 0.10.3), pvca (>= 1.4.0), snm (>= 1.12.0), sva (>= 3.10.0), vsn (>= 3.32.0) VignetteBuilder: knitr biocViews: ImmunoOncologyWorkflow, Workflow, GeneExpressionWorkflow Suggests: knitr, BiocStyle License: GPL (>=3) Encoding: UTF-8 BugReports: https://github.com/ RoxygenNote: 5.0.1.9000 Config/pak/sysreqs: cmake make libpng-dev libxml2-dev libssl-dev zlib1g-dev Repository: https://bioc.r-universe.dev Date/Publication: 2026-04-28 12:40:28 UTC RemoteUrl: https://github.com/bioc/ExpressionNormalizationWorkflow RemoteRef: HEAD RemoteSha: 1a71bf288645a27c6e47a188c76f28eb48892120 NeedsCompilation: no Packaged: 2026-10-08 12:41:52 UTC; root Author: Karthikeyan Murugesan [aut, cre], Greg Gibson [sad, ths] Maintainer: Karthikeyan Murugesan