Package: ExpoRiskR
Type: Package
Title: Exposure-Aware Multi-Omics Risk Modeling
Version: 1.1.0
Authors@R: c(
    person("Prem Prashant", "Chaudhary",
           email = "chaudharyp2@nih.gov",
           role = c("aut", "cre"),
           comment = c(ORCID = "0000-0002-3467-8608"))
 )
Description: ExpoRiskR provides tools for exposure-aware multi-omics
        risk modeling in translational and environmental health
        studies. The package aligns sample identifiers across exposure
        and multi-omics blocks, performs lightweight preprocessing, and
        fits exposure-adjusted association models to build
        interpretable microbe–metabolite networks. It also computes
        simple exposure perturbation summaries and generates
        publication-ready visualizations. Workflows support both
        matrix-based inputs and SummarizedExperiment objects.
License: MIT + file LICENSE
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.2
URL: https://github.com/ppchaudhary/ExpoRiskR
BugReports: https://github.com/ppchaudhary/ExpoRiskR/issues
Imports: stats, ggplot2, igraph, SummarizedExperiment, S4Vectors, utils
Suggests: BiocStyle, BiocCheck, knitr, rmarkdown, withr, testthat (>=
        3.0.0)
VignetteBuilder: knitr
Config/testthat/edition: 3
biocViews: Software, Network, SystemsBiology, Metabolomics, Microbiome,
        Regression
Config/pak/sysreqs: libglpk-dev libxml2-dev zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-04-28 13:06:43 UTC
RemoteUrl: https://github.com/bioc/ExpoRiskR
RemoteRef: HEAD
RemoteSha: 1e05ac38d58b2ef72da61284e9ad76e8cdd21ffa
NeedsCompilation: no
Packaged: 2026-07-03 18:22:17 UTC; root
Author: Prem Prashant Chaudhary [aut, cre] (ORCID:
    <https://orcid.org/0000-0002-3467-8608>)
Maintainer: Prem Prashant Chaudhary <chaudharyp2@nih.gov>