Package: ExploreModelMatrix
Type: Package
Title: Graphical Exploration of Design Matrices
Version: 1.25.0
Date: 2026-03-16
Authors@R: c(person("Charlotte", "Soneson", role = c("aut", "cre"), 
    email = "charlottesoneson@gmail.com", 
    comment = c(ORCID = "0000-0003-3833-2169")),
    person("Federico", "Marini", role = "aut", 
    email = "marinif@uni-mainz.de",
    comment = c(ORCID = "0000-0003-3252-7758")),
    person("Michael", "Love", role = "aut", 
    email = "michaelisaiahlove@gmail.com",
    comment = c(ORCID = "0000-0001-8401-0545")),
    person("Florian", "Geier", role = "aut",
    email = "florian.geier@unibas.ch",
    comment = c(ORCID = "0000-0002-9076-9264")),
    person("Michael", "Stadler", role = "aut",
    email = "michael.stadler@fmi.ch",
    comment = c(ORCID = "0000-0002-2269-4934")))
Description: Given a sample data table and a design formula,
        ExploreModelMatrix generates an interactive application for
        exploration of the resulting design matrix. This can be helpful
        for interpreting model coefficients and constructing
        appropriate contrasts in (generalized) linear models. Static
        visualizations can also be generated.
License: MIT + file LICENSE
Encoding: UTF-8
Imports: shiny (>= 1.5.0), shinydashboard, DT, cowplot, utils, dplyr,
        magrittr, tidyr, ggplot2, stats, methods, rintrojs, scales,
        tibble, MASS, limma, S4Vectors, shinyjs, rlang
RoxygenNote: 7.3.3
Suggests: testthat (>= 2.1.0), knitr, rmarkdown, htmltools, BiocStyle
VignetteBuilder: knitr
URL: https://github.com/csoneson/ExploreModelMatrix
BugReports: https://github.com/csoneson/ExploreModelMatrix/issues
biocViews: ExperimentalDesign, Regression, DifferentialExpression,
        ShinyApps
Config/pak/sysreqs: cmake make libicu-dev libuv1-dev zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-04-28 12:52:19 UTC
RemoteUrl: https://github.com/bioc/ExploreModelMatrix
RemoteRef: HEAD
RemoteSha: 384a0c2d9a946de137759d156751c4d3c8dfb80b
NeedsCompilation: no
Packaged: 2026-06-08 07:05:47 UTC; root
Author: Charlotte Soneson [aut, cre] (ORCID:
    <https://orcid.org/0000-0003-3833-2169>),
  Federico Marini [aut] (ORCID: <https://orcid.org/0000-0003-3252-7758>),
  Michael Love [aut] (ORCID: <https://orcid.org/0000-0001-8401-0545>),
  Florian Geier [aut] (ORCID: <https://orcid.org/0000-0002-9076-9264>),
  Michael Stadler [aut] (ORCID: <https://orcid.org/0000-0002-2269-4934>)
Maintainer: Charlotte Soneson <charlottesoneson@gmail.com>