Package: ExperimentSubset
Type: Package
Title: Manages subsets of data with Bioconductor Experiment objects
Version: 1.23.0
Date: 2021-05-09
Authors@R: c(person(given="Irzam", family="Sarfraz", email="irzam9095@gmail.com", role=c("aut","cre"),
              comment = c(ORCID = "0000-0001-8121-792X")),
            person(given="Muhammad", family="Asif", email="asif@ntu.edu.pk", role=c("aut","ths"),
              comment = c(ORCID = "0000-0003-1839-2527")),
            person(given=c("Joshua","D."), family="Campbell", email="camp@bu.edu", role=c("aut"),
                   comment = c(ORCID = "0000-0003-0780-8662")))
Description: Experiment objects such as the SummarizedExperiment or
        SingleCellExperiment are data containers for one or more
        matrix-like assays along with the associated row and column
        data. Often only a subset of the original data is needed for
        down-stream analysis. For example, filtering out poor quality
        samples will require excluding some columns before analysis.
        The ExperimentSubset object is a container to efficiently
        manage different subsets of the same data without having to
        make separate objects for each new subset.
License: MIT + file LICENSE
Encoding: UTF-8
RoxygenNote: 7.1.1
Depends: R (>= 4.0.0), SummarizedExperiment, SingleCellExperiment,
        SpatialExperiment, TreeSummarizedExperiment
biocViews: Infrastructure, Software, DataImport, DataRepresentation
Imports: methods, Matrix, S4Vectors
Suggests: BiocStyle, knitr, rmarkdown, testthat, covr, stats, scran,
        scater, scds, TENxPBMCData, airway
VignetteBuilder: knitr
Collate: 'allClasses.R' 'allGenerics.R' 'ExperimentSubset.R'
        'SubsetRangedSummarizedExperiment.R'
        'SubsetSingleCellExperiment.R' 'SubsetSummarizedExperiment.R'
        'SubsetSpatialExperiment.R' 'SubsetTreeSummarizedExperiment.R'
Config/pak/sysreqs: cmake make libmagick++-dev gsfonts libicu-dev
        libuv1-dev libssl-dev zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-04-28 12:54:05 UTC
RemoteUrl: https://github.com/bioc/ExperimentSubset
RemoteRef: HEAD
RemoteSha: 6186a5d5c47ab1d890ff1153bda4b159f5b23d55
NeedsCompilation: no
Packaged: 2026-07-04 04:26:20 UTC; root
Author: Irzam Sarfraz [aut, cre] (ORCID:
    <https://orcid.org/0000-0001-8121-792X>),
  Muhammad Asif [aut, ths] (ORCID:
    <https://orcid.org/0000-0003-1839-2527>),
  Joshua D. Campbell [aut] (ORCID:
    <https://orcid.org/0000-0003-0780-8662>)
Maintainer: Irzam Sarfraz <irzam9095@gmail.com>