Package: ExperimentSubset
Type: Package
Title: Manages Subsets of Data with Bioconductor Experiment Objects
Version: 1.23.14
Authors@R: c(person(given="Irzam", family="Sarfraz", email="irzam9095@gmail.com", role=c("aut","cre"),
              comment = c(ORCID = "0000-0001-8121-792X")),
            person(given="Muhammad", family="Asif", email="asif@ntu.edu.pk", role=c("aut","ths"),
              comment = c(ORCID = "0000-0003-1839-2527")),
            person(given=c("Joshua","D."), family="Campbell", email="camp@bu.edu", role=c("aut"),
                   comment = c(ORCID = "0000-0003-0780-8662")))
Description: Experiment objects such as the SummarizedExperiment,
        RangedSummarizedExperiment, SingleCellExperiment,
        TreeSummarizedExperiment or SpatialExperiment are data
        containers for one or more matrix-like assays along with the
        associated row and column data. Often only a subset of the
        original data is needed for down-stream analysis. For example,
        filtering out poor quality samples will require excluding some
        columns before analysis. The ExperimentSubset object is a
        container to efficiently manage different subsets of the same
        data without having to make separate objects for each new
        subset.
License: MIT + file LICENSE
URL: https://github.com/campbio/ExperimentSubset
BugReports: https://github.com/campbio/ExperimentSubset/issues
Encoding: UTF-8
Depends: R (>= 4.0.0), SummarizedExperiment, SingleCellExperiment,
        SpatialExperiment, TreeSummarizedExperiment
biocViews: Infrastructure, Software, DataImport, DataRepresentation
Imports: methods, Matrix, S4Vectors
Suggests: BiocStyle, knitr, rmarkdown, testthat, covr, stats, scrapper,
        scater, scds, TENxPBMCData, airway
VignetteBuilder: knitr
Collate: 'allClasses.R' 'allGenerics.R' 'ExperimentSubset.R'
        'SubsetRangedSummarizedExperiment.R'
        'SubsetSingleCellExperiment.R' 'SubsetSummarizedExperiment.R'
        'SubsetSpatialExperiment.R' 'SubsetTreeSummarizedExperiment.R'
Config/roxygen2/version: 8.1.0
Config/pak/sysreqs: cmake make libmagick++-dev gsfonts libicu-dev
        libuv1-dev libssl-dev zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-10-23 03:02:48 UTC
RemoteUrl: https://github.com/bioc/ExperimentSubset
RemoteRef: HEAD
RemoteSha: cfc60691113557291f1e7f0cff42e0ecd36cbb44
NeedsCompilation: no
Packaged: 2026-10-26 06:46:04 UTC; root
Author: Irzam Sarfraz [aut, cre] (ORCID:
    <https://orcid.org/0000-0001-8121-792X>),
  Muhammad Asif [aut, ths] (ORCID:
    <https://orcid.org/0000-0003-1839-2527>),
  Joshua D. Campbell [aut] (ORCID:
    <https://orcid.org/0000-0003-0780-8662>)
Maintainer: Irzam Sarfraz <irzam9095@gmail.com>