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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "EventPointer" in publications use:'
type: software
license: Artistic-2.0
title: 'EventPointer: An effective identification of alternative splicing events using
  junction arrays and RNA-Seq data'
version: 3.13.0
doi: 10.1186/s12864-016-2816-x
abstract: 'EventPointer is an R package to identify alternative splicing events that
  involve either simple (case-control experiment) or complex experimental designs
  such as time course experiments and studies including paired-samples. The algorithm
  can be used to analyze data from either junction arrays (Affymetrix Arrays) or sequencing
  data (RNA-Seq). The software returns a data.frame with the detected alternative
  splicing events: gene name, type of event (cassette, alternative 3'',...,etc), genomic
  position, statistical significance and increment of the percent spliced in (Delta
  PSI) for all the events. The algorithm can generate a series of files to visualize
  the detected alternative splicing events in IGV. This eases the interpretation of
  results and the design of primers for standard PCR validation.'
authors:
- family-names: Romero
  given-names: Juan Pablo
  email: jpromero@ceit.es
- family-names: Ferrer-Bonsoms
  given-names: Juan A.
  email: jafhernandez@tecnun.es
- family-names: Sacristan
  given-names: Pablo
  email: a904719@alumni.unav.es
- family-names: Muniategui
  given-names: Ander
- family-names: Carazo
  given-names: Fernando
- family-names: Aramburu
  given-names: Ander
- family-names: Rubio
  given-names: Angel
  email: arubio@tecnun.es
preferred-citation:
  type: article
  title: 'EventPointer: an effective identification of alternative splicing events
    using junction arrays'
  authors:
  - family-names: Romero
    given-names: Juan P.
  - family-names: Muniategui
    given-names: Ander
  - family-names: De Miguel
    given-names: Fernando J.
  - family-names: Aramburu
    given-names: Ander
  - family-names: Montuenga
    given-names: Luis
  - family-names: Pio
    given-names: Ruben
  - family-names: Rubio
    given-names: Angel
    email: arubio@tecnun.es
  year: '2016'
  journal: BMC Genomics
  volume: '17'
  issue: '1'
  doi: 10.1186/s12864-016-2816-x
  start: '467'
repository: https://bioc.r-universe.dev
repository-code: https://github.com/jpromeror/EventPointer
url: https://github.com/jpromeror/EventPointer
contact:
- family-names: Ferrer-Bonsoms
  given-names: Juan A.
  email: jafhernandez@tecnun.es
references:
- type: article
  title: Comparison of RNA-seq and microarray platforms for splice event detection
    using a cross-platform algorithm
  authors:
  - family-names: Romero
    given-names: Juan P.
  - family-names: Ortiz-Estevez
    given-names: Maria
  - family-names: Muniategui
    given-names: Ander
  - family-names: Carrancio
    given-names: Soraya
  - family-names: Miguel
    given-names: Fernando J
    name-particle: de
  - family-names: Carazo
    given-names: Fernando
  - family-names: Montuenga
    given-names: Luis M
  - family-names: Loos
    given-names: Remco
  - family-names: Pio
    given-names: Ruben
  - family-names: Trotter
    given-names: Matthew WB
  - family-names: Rubio
    given-names: Angel
  year: '2018'
  journal: BMC Genomics
  volume: '19'
  issue: '1'
  doi: 10.1186/s12864-018-5082-2
  start: '703'