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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "EpiMix" in publications use:'
type: software
license: GPL-3.0-only
title: 'EpiMix: EpiMix: an integrative tool for the population-level analysis of DNA
  methylation'
version: 1.7.1
abstract: EpiMix is a comprehensive tool for the integrative analysis of high-throughput
  DNA methylation data and gene expression data. EpiMix enables automated data downloading
  (from TCGA or GEO), preprocessing, methylation modeling, interactive visualization
  and functional annotation.To identify hypo- or hypermethylated CpG sites across
  physiological or pathological conditions, EpiMix uses a beta mixture modeling to
  identify the methylation states of each CpG probe and compares the methylation of
  the experimental group to the control group.The output from EpiMix is the functional
  DNA methylation that is predictive of gene expression. EpiMix incorporates specialized
  algorithms to identify functional DNA methylation at various genetic elements, including
  proximal cis-regulatory elements of protein-coding genes, distal enhancers, and
  genes encoding microRNAs and lncRNAs.
authors:
- family-names: Zheng
  given-names: Yuanning
  email: eric2021@stanford.edu
- family-names: Sujansky
  given-names: Markus
  email: sujansky@bc.edu
- family-names: Jun
  given-names: John
  email: johnjun094@gmail.com
- family-names: Gevaert
  given-names: Olivier
  email: ogevaert@stanford.edu
repository: https://bioc.r-universe.dev
repository-code: https://github.com/gevaertlab/EpiMix
url: https://github.com/gevaertlab/EpiMix
contact:
- family-names: Zheng
  given-names: Yuanning
  email: eric2021@stanford.edu