# --------------------------------------------
# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
# --------------------------------------------
 
cff-version: 1.2.0
message: 'To cite package "EpiDISH" in publications use:'
type: software
license: GPL-2.0-only
title: 'EpiDISH: Epigenetic Dissection of Intra-Sample-Heterogeneity'
version: 2.21.1
identifiers:
- type: doi
  value: 10.32614/CRAN.package.EpiDISH
abstract: EpiDISH is a R package to infer the proportions of a priori known cell-types
  present in a sample representing a mixture of such cell-types. Right now, the package
  can be used on DNAm data of whole blood, generic epithelial tissue and breast tissue.
  Besides, the package provides a function that allows the identification of differentially
  methylated cell-types and their directionality of change in Epigenome-Wide Association
  Studies.
authors:
- family-names: Teschendorff
  given-names: Andrew E.
  email: andrew@picb.ac.cn
- family-names: Zheng
  given-names: Shijie C.
  email: shijieczheng@gmail.com
preferred-citation:
  type: article
  title: Identification of differentially methylated cell-types in Epigenome-Wide
    Association Studies
  authors:
  - family-names: Zheng
    given-names: Shijie C.
    email: shijieczheng@gmail.com
  - family-names: Breeze
    given-names: Charles E.
  - family-names: Beck
    given-names: Stephan
  - family-names: Teschendorff
    given-names: Andrew E.
    email: andrew@picb.ac.cn
  journal: Nature Methods
  volume: '15'
  issue: '12'
  year: '2018'
  start: '1059'
repository: https://bioc.r-universe.dev
repository-code: https://github.com/sjczheng/EpiDISH
commit: 43286e6aefc8e1db636a5322ee071b9ff1d34542
url: https://github.com/sjczheng/EpiDISH
date-released: '2024-06-19'
contact:
- family-names: Zheng
  given-names: Shijie C.
  email: shijieczheng@gmail.com
references:
- type: article
  title: A novel cell-type deconvolution algorithm reveals substantial contamination
    by immune cells in saliva, buccal and cervix
  authors:
  - family-names: Zheng
    given-names: Shijie C.
  - family-names: Webster
    given-names: Amy P.
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    given-names: Danyue
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  - family-names: Teschendorff
    given-names: Andrew E.
  journal: Epigenomics
  year: '2018'
  volume: '10'
  issue: '7'
- type: article
  title: A comparison of reference-based algorithms for correcting cell-type heterogeneity
    in Epigenome-Wide Association Studies
  authors:
  - family-names: Teschendorff
    given-names: Andrew E.
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  journal: BMC bioinformatics
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  journal: Nature Methods
  volume: '12'
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- type: article
  title: 'Cell-type deconvolution in epigenome-wide association studies: a review
    and recommendations'
  authors:
  - family-names: Teschendorff
    given-names: Andrew E.
  - family-names: Zheng
    given-names: Shijie C.
  journal: Epigenomics
  volume: '9'
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