## R version 4.6.1 (2026-06-24)
## Platform: x86_64-pc-linux-gnu
## Running under: Ubuntu 26.04.1 LTS
##
## Matrix products: default
## BLAS: /usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so.3
## LAPACK: /usr/lib/x86_64-linux-gnu/openblas-pthread/libopenblasp-r0.3.32.so; LAPACK version 3.12.0
##
## locale:
## [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C
## [3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8
## [5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8
## [7] LC_PAPER=en_US.UTF-8 LC_NAME=C
## [9] LC_ADDRESS=C LC_TELEPHONE=C
## [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
##
## time zone: Etc/UTC
## tzcode source: system (glibc)
##
## attached base packages:
## [1] stats graphics grDevices utils datasets methods base
##
## other attached packages:
## [1] EpiCompare_1.17.0 BiocStyle_2.41.0
##
## loaded via a namespace (and not attached):
## [1] RColorBrewer_1.1-3
## [2] sys_3.4.3
## [3] jsonlite_2.0.0
## [4] tidydr_0.0.7
## [5] magrittr_2.0.5
## [6] ggtangle_0.1.3
## [7] GenomicFeatures_1.65.0
## [8] farver_2.1.2
## [9] rmarkdown_2.32
## [10] fs_2.1.0
## [11] BiocIO_1.23.3
## [12] vctrs_0.7.3
## [13] memoise_2.0.1
## [14] Rsamtools_2.29.0
## [15] RCurl_1.98-1.20
## [16] base64enc_0.1-6
## [17] ggtree_4.3.0
## [18] htmltools_0.5.9
## [19] TxDb.Hsapiens.UCSC.hg19.knownGene_3.22.1
## [20] BiocBaseUtils_1.15.1
## [21] plotrix_3.8-14
## [22] AnnotationHub_4.3.2
## [23] curl_8.0.0
## [24] gridGraphics_0.5-1
## [25] sass_0.4.10
## [26] KernSmooth_2.23-27
## [27] bslib_0.12.0
## [28] htmlwidgets_1.6.4
## [29] plyr_1.8.9
## [30] httr2_1.3.0
## [31] lubridate_1.9.5
## [32] plotly_4.12.1
## [33] impute_1.87.0
## [34] cachem_1.1.0
## [35] buildtools_1.0.0
## [36] GenomicAlignments_1.49.2
## [37] igraph_2.3.4
## [38] mime_0.13
## [39] downloadthis_0.5.0
## [40] lifecycle_1.0.5
## [41] pkgconfig_2.0.3
## [42] Matrix_1.7-6
## [43] R6_2.6.1
## [44] fastmap_1.2.0
## [45] digest_0.6.39
## [46] aplot_0.3.2
## [47] enrichplot_1.99.8
## [48] ggnewscale_0.5.2
## [49] patchwork_1.3.2
## [50] AnnotationDbi_1.75.2
## [51] S4Vectors_0.51.10
## [52] GenomicRanges_1.65.4
## [53] RSQLite_3.53.3
## [54] labeling_0.4.3
## [55] bsplus_0.1.5
## [56] filelock_1.0.3
## [57] timechange_0.4.0
## [58] httr_1.4.9
## [59] polyclip_1.10-7
## [60] compiler_4.6.1
## [61] withr_3.0.3
## [62] bit64_4.8.6
## [63] fontquiver_0.2.1
## [64] S7_0.2.2
## [65] BiocParallel_1.47.0
## [66] DBI_1.3.0
## [67] gplots_3.3.0
## [68] ggforce_0.5.0
## [69] MASS_7.3-66
## [70] ChIPseeker_1.49.3
## [71] rappdirs_0.3.4
## [72] rjson_0.2.23
## [73] caTools_1.18.4
## [74] gtools_3.9.5
## [75] tools_4.6.1
## [76] otel_0.2.0
## [77] ape_5.8-1
## [78] scatterpie_0.2.6
## [79] glue_1.8.1
## [80] restfulr_0.0.17
## [81] nlme_3.1-171
## [82] GOSemSim_2.39.4
## [83] grid_4.6.1
## [84] gridBase_0.4-7
## [85] cluster_2.1.8.3
## [86] reshape2_1.4.5
## [87] generics_0.1.4
## [88] BSgenome_1.81.1
## [89] gtable_0.3.6
## [90] tzdb_0.5.0
## [91] seqPattern_1.45.0
## [92] tidyr_1.3.2
## [93] hms_1.1.4
## [94] data.table_1.18.6.1
## [95] XVector_0.53.0
## [96] BiocGenerics_0.59.12
## [97] ggrepel_0.9.8
## [98] BiocVersion_3.24.0
## [99] pillar_1.11.1
## [100] stringr_1.6.0
## [101] yulab.utils_0.2.5
## [102] dplyr_1.2.1
## [103] tweenr_2.0.3
## [104] BiocFileCache_3.3.0
## [105] treeio_1.37.1
## [106] lattice_0.23-1
## [107] rtracklayer_1.73.0
## [108] bit_4.6.0
## [109] tidyselect_1.2.1
## [110] fontLiberation_0.1.0
## [111] GO.db_3.23.1
## [112] maketools_1.3.2
## [113] Biostrings_2.81.9
## [114] knitr_1.52
## [115] fontBitstreamVera_0.1.1
## [116] IRanges_2.47.5
## [117] Seqinfo_1.3.2
## [118] stats4_4.6.1
## [119] xfun_0.61
## [120] Biobase_2.73.2
## [121] matrixStats_1.5.0
## [122] stringi_1.8.9
## [123] UCSC.utils_1.9.0
## [124] lazyeval_0.2.3
## [125] ggfun_0.2.2
## [126] yaml_2.3.12
## [127] boot_1.3-32
## [128] evaluate_1.0.5
## [129] codetools_0.2-20
## [130] cigarillo_1.3.1
## [131] gdtools_0.5.1
## [132] tibble_3.3.1
## [133] BiocManager_1.30.27
## [134] ggplotify_0.1.3
## [135] cli_3.6.6
## [136] systemfonts_1.3.2
## [137] jquerylib_0.1.4
## [138] Rcpp_1.1.2
## [139] GenomeInfoDb_1.49.1
## [140] dbplyr_2.6.0
## [141] png_0.1-9
## [142] XML_3.99-0.25
## [143] parallel_4.6.1
## [144] readr_2.2.0
## [145] ggplot2_4.0.3
## [146] blob_1.3.0
## [147] DOSE_4.7.3
## [148] bitops_1.1-0
## [149] viridisLite_0.4.3
## [150] tidytree_0.4.8
## [151] ggiraph_0.9.6
## [152] enrichit_0.2.6
## [153] scales_1.4.0
## [154] genomation_1.45.0
## [155] purrr_1.2.2
## [156] crayon_1.5.3
## [157] rlang_1.3.0
## [158] KEGGREST_1.53.6