Package: EasyCellType Title: Annotate cell types for scRNA-seq data Version: 1.15.0 Authors@R: c( person(given="Ruoxing", family="Li", email="ruoxingli@outlook.com", role=c("aut", "cre", "ctb")), person(given="Ziyi", family="Li", email="zli16@mdanderson.org", role="ctb")) Description: We developed EasyCellType which can automatically examine the input marker lists obtained from existing software such as Seurat over the cell markerdatabases. Two quantification approaches to annotate cell types are provided: Gene set enrichment analysis (GSEA) and a modified versio of Fisher's exact test. The function presents annotation recommendations in graphical outcomes: bar plots for each cluster showing candidate cell types, as well as a dot plot summarizing the top 5 significant annotations for each cluster. License: Artistic-2.0 RoxygenNote: 7.3.1 Encoding: UTF-8 Depends: R (>= 4.2.0) biocViews: SingleCell, Software, GeneExpression, GeneSetEnrichment Imports: clusterProfiler, dplyr, forcats, ggplot2, magrittr, rlang, stats, org.Hs.eg.db, org.Mm.eg.db, AnnotationDbi, vctrs (>= 0.6.4), BiocStyle Suggests: knitr, rmarkdown, testthat (>= 3.0.0), Seurat, BiocManager, devtools, BiocStyle VignetteBuilder: knitr Config/testthat/edition: 3 Config/pak/sysreqs: libcairo2-dev cmake libfontconfig1-dev libfreetype6-dev libglpk-dev make libicu-dev libpng-dev libuv1-dev libxml2-dev libssl-dev zlib1g-dev Repository: https://bioc.r-universe.dev Date/Publication: 2026-04-28 12:58:53 UTC RemoteUrl: https://github.com/bioc/EasyCellType RemoteRef: HEAD RemoteSha: 71d2b988eac3c25bd253c91977c40c4ccf018df0 NeedsCompilation: no Packaged: 2026-07-04 22:58:16 UTC; root Author: Ruoxing Li [aut, cre, ctb], Ziyi Li [ctb] Maintainer: Ruoxing Li