# --------------------------------------------
# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
# --------------------------------------------
 
cff-version: 1.2.0
message: 'To cite package "ENmix" in publications use:'
type: software
license: Artistic-2.0
title: 'ENmix: Quality control and analysis tools for Illumina DNA methylation BeadChip'
version: 1.41.2
identifiers:
- type: doi
  value: 10.32614/CRAN.package.ENmix
abstract: Tools for quanlity control, analysis and visulization of Illumina DNA methylation
  array data.
authors:
- family-names: Xu
  given-names: Zongli
  email: xuz@niehs.nih.gov
- family-names: Niu
  given-names: Liang
  email: niulg@ucmail.uc.edu
preferred-citation:
  type: article
  title: 'ENmix: a novel background correction method for Illumina HumanMethylation450
    BeadChip'
  authors:
  - family-names: Xu
    given-names: Zongli
    email: xuz@niehs.nih.gov
  - family-names: Niu
    given-names: Liang
    email: niulg@ucmail.uc.edu
  - family-names: Li
    given-names: Leping
  - family-names: Taylor
    given-names: Jack,A.
  year: '2016'
  journal: Nucleic Acids Research
repository: https://bioc.r-universe.dev
repository-code: https://github.com/Bioconductor/ENmix
commit: b6da63addc478b800c982455554192ead943f106
url: https://github.com/Bioconductor/ENmix
contact:
- family-names: Xu
  given-names: Zongli
  email: xuz@niehs.nih.gov
references:
- type: article
  title: The ENmix DNA methylation analysis pipeline for Illumina BeadChip and comparisons
    to 7 other preprocessing pipelines
  authors:
  - family-names: Xu
    given-names: Zongli
  - family-names: Niu
    given-names: Liang
  - family-names: Sandler
    given-names: Dale,P.
  - family-names: Taylor
    given-names: Jack,A.
  journal: Clinical Epigenetics
  year: '2022'
- type: article
  title: 'RCP: a novel probe design bias correction method for Illumina Methylation
    BeadChip'
  authors:
  - family-names: Niu
    given-names: Liang
  - family-names: Xu
    given-names: Zongli
  - family-names: Taylor
    given-names: Jack,A.
  journal: Bioinformatics
  year: '2016'
- type: article
  title: 'oxBS-MLE: An efficient method to estimate 5-methylcytosine and 5-hydroxymethylcytosine
    in paired bisulfite and oxidative bisulfite treated DNA'
  authors:
  - family-names: Xu
    given-names: Zongli
  - family-names: Taylor
    given-names: Jack,A.
  - family-names: Leung
    given-names: Yuet-Kin
  - family-names: Ho
    given-names: Shuk-Mei
  - family-names: Niu
    given-names: Liang
  journal: Bioinformatics
  year: '2016'
- type: article
  title: 'RELIC: a novel dye-bias correction method for Illumina Methylation BeadChip'
  authors:
  - family-names: Xu
    given-names: Zongli
  - family-names: Taylor
    given-names: Jack,A.
  - family-names: Langie
    given-names: Sabine,A.S.
  - family-names: Boever
    given-names: Patrick,De
  - family-names: Niu
    given-names: Liang
  journal: BMC Genomics
  year: '2017'
- type: article
  title: Reliability of DNA methylation measures using Illumina methylation BeadChip
  authors:
  - family-names: Xu
    given-names: Zongli
  - family-names: Taylor
    given-names: Jack,A.
  journal: Epigenetics
  year: '2020'
- type: article
  title: 'ipDMR: Identification of differentially methyl-ated regions with interval
    P values'
  authors:
  - family-names: Xu
    given-names: Zongli
  - family-names: Xie
    given-names: Changchun
  - family-names: Taylor
    given-names: Jack,A.
  - family-names: Niu
    given-names: Liang
  journal: Bioinformatics
  year: '2020'
- type: article
  title: 'Methscore: a comprehensive R function for DNA methylation-based health predictors'
  authors:
  - family-names: Xu
    given-names: Zongli
  - family-names: Niu
    given-names: Liang
  - family-names: Kresovich
    given-names: Jacob,K.
  - family-names: Taylor
    given-names: Jack,A.
  journal: Bioinformatics
  year: '2024'