Changes in version 0.99.10 o Reworded the correlate_sample_scores() error handler message ("Invalid correlation for ..." instead of "Error in correlation for ...") so it no longer triggers the BiocCheck note about redundant 'stop' and 'warn*' wording in signal conditions. o Used <- instead of = for the two remaining top-level assignments in the vignette (colors and emt_names), clearing the lintr assignment_linter output. Changes in version 0.99.8 o Version bump to re-trigger the build after a transient missing-dependency error (GSVA / ScaledMatrix / BiocSingular) on the Bioconductor build system; no package code changes. Changes in version 0.99.7 o Subset the bundled filtered.c2.gmt gene-set file to 500 representative pathways so the vignette (and R CMD check) completes well within the 10-minute time limit; the pathway-correlation example is unchanged in spirit. Changes in version 0.99.6 o Removed the non-standard 'BiocType' DESCRIPTION field that triggered an "Unknown or non-standard DESCRIPTION field(s)" warning in R CMD check; the package is already declared as Software via biocViews. Changes in version 0.99.5 o Further Bioconductor review responses: o Replaced the remaining import() directives with selective importFrom(), keeping import() only where whole-package access is required (ggplot2, and mclust / Matrix for S4 method dispatch). o Replaced direct Seurat @meta.data slot access with accessors ([[ ]], AddMetaData) in the single-cell scoring functions. o Vignette now saves and restores the user's options() and adds a comparison to related Bioconductor gene-set scoring packages in the Introduction. o Added inst/script/make-data.R documenting the provenance and creation of every data/ object, referenced from each data man page. o Fixed the orientation of Execute_SCSE_parallel() so its output matches the other parallel scorers (samples x gene sets). Changes in version 0.99.4 o Responded to the Bioconductor package review: o Rewrote Title and Description without single quotes and wrapped them. o Wrapped Authors@R and added the maintainer ORCID and funder (fnd) entries. o Added 'BiocType: Software' and replaced the data-experiment biocViews with Software biocViews. o Switched parallel execution to BiocParallel and file downloads to BiocFileCache. o Read GMT gene sets with GSEABase and removed the redundant custom reader. o Vectorised correlate_sample_scores() and removed blanket tryCatch() calls and utils::globalVariables(). o Reworked the vignette to use BiocStyle, a generated table of contents and an installation section, and to demonstrate SummarizedExperiment / SingleCellExperiment input. o Expanded the unit test suite and moved Figure1.png to man/figures. Changes in version 0.99.1 o Development iterations before the Bioconductor review: refined function documentation and examples, corrected gene set file names, and updated the vignette. Changes in version 0.99.0 o Submitted to Bioconductor.