ELViS

^{R4.3 & Bioc3.18 (Ubuntu & Windows) :}
^{R4.4 & Bioc3.19 (Ubuntu & Windows) :}

An R Package for Estimating Copy Number Levels of Viral Genome Segments Using Base-Resolution Read Depth Profile.

DESCRIPTION

Base-resolution copy number analysis of viral genome. Utilizes base-resolution read depth data over viral genome to find copy number segments with two-dimensional segmentation approach.
Provides publish-ready figures, including
- histograms of read depths
- coverage line plots over viral genome annotated with copy number change events and viral genes
- heatmaps showing multiple types of data with integrative clustering of samples.

To install this package, start R (version "4.5") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ELViS")

Please refer to vignette.