To cite package ‘ELViS’ in publications use:

  Choi H, Lee J, Hoadley K, Hayes D (2025). _ELViS: An R Package for
  Estimating Copy Number Levels of Viral Genome Segments Using
  Base-Resolution Read Depth Profile_. R package version 0.99.11,
  <https://bioconductor.org/packages/ELViS>.

A BibTeX entry for LaTeX users is

  @Manual{,
    title = {ELViS: An R Package for Estimating Copy Number Levels of Viral Genome
Segments Using Base-Resolution Read Depth Profile},
    author = {Hyo Young Choi and Jin-Young Lee and Katherine A. Hoadley and D. Neil Hayes},
    year = {2025},
    note = {R package version 0.99.11},
    url = {https://bioconductor.org/packages/ELViS},
  }