Package: EDIRquery
Title: Query the EDIR Database For Specific Gene
Version: 1.13.0
Authors@R: 
    person("Laura D.T.", "Vo Ngoc", , "doan.vongoc@vub.be", 
            role = c("aut", "cre"), comment = c(ORCID = "0000-0002-1597-900X"))
Description: EDIRquery provides a tool to search for genes of interest
        within the Exome Database of Interspersed Repeats (EDIR). A
        gene name is a required input, and users can additionally
        specify repeat sequence lengths, minimum and maximum distance
        between sequences, and whether to allow a 1-bp mismatch.
        Outputs include a summary of results by repeat length, as well
        as a dataframe of query results. Example data provided includes
        a subset of the data for the gene GAA (ENSG00000171298). To
        query the full database requires providing a path to the
        downloaded database files as a parameter.
License: GPL-3
Encoding: UTF-8
biocViews: Genetics, SequenceMatching
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.2.3
Depends: R (>= 4.2.0)
Imports: tibble (>= 3.1.6), tictoc (>= 1.0.1), utils (>= 4.1.3), stats
        (>= 4.1.3), readr (>= 2.1.2), InteractionSet (>= 1.22.0),
        GenomicRanges (>= 1.46.1)
Suggests: knitr, rmarkdown, testthat (>= 3.0.0)
VignetteBuilder: knitr
Config/testthat/edition: 3
Config/pak/sysreqs: libx11-dev zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-04-28 13:00:33 UTC
RemoteUrl: https://github.com/bioc/EDIRquery
RemoteRef: HEAD
RemoteSha: c3bebae42bf0a3d5140d81a79eaaefafc6e10958
NeedsCompilation: no
Packaged: 2026-07-09 09:56:07 UTC; root
Author: Laura D.T. Vo Ngoc [aut, cre] (ORCID:
    <https://orcid.org/0000-0002-1597-900X>)
Maintainer: Laura D.T. Vo Ngoc <doan.vongoc@vub.be>