Package: DuckDBArray
Version: 0.99.11
Date: 2026-10-07
Title: DuckDB-Backed DelayedArray Implementation
Description: Provides DuckDB-backed implementations of DelayedArray and
        DelayedMatrix classes for efficient, out-of-memory operations
        on large array and matrix datasets. The package includes
        DuckDBArray, DuckDBArraySeed, and DuckDBMatrix classes with
        optimized matrixStats methods. Supports sparse arrays, grid
        partitioning, and parallel processing for scalable genomic data
        analysis.
Authors@R: 
    c(
        person("Patrick", "Aboyoun", role=c("aut", "cre"), email="aboyounp@gene.com"),
        person("Genentech, Inc.", role="cph")
    )
License: MIT + file LICENSE
URL: https://github.com/Genentech/DuckDBArray
BugReports: https://github.com/Genentech/DuckDBArray/issues
Depends: R (>= 4.5.0), methods, stats, DuckDBDataFrame, DelayedArray,
        SparseArray
Imports: BiocGenerics, S4Vectors, IRanges, S4Arrays, Matrix,
        MatrixGenerics, DBI, dplyr, dbplyr, arrow
Suggests: knitr, rmarkdown, BiocStyle, testthat, matrixStats,
        microbenchmark, BiocParallel, DelayedMatrixStats,
        ExperimentHub, HDF5Array, sparseMatrixStats,
        SummarizedExperiment, TileDBArray, airway
biocViews: DataImport, DataRepresentation, Infrastructure, Software
VignetteBuilder: knitr
Encoding: UTF-8
Collate: 'DuckDBArraySeed-class.R' 'DuckDBArraySeed-utils.R'
        'DuckDBArray-class.R' 'DuckDBTable-matrixStats.R'
        'DuckDBArraySeed-matrixStats.R' 'DuckDBArray-matrixStats.R'
        'DuckDBArray-package.R' 'DuckDBArray-utils.R'
        'DuckDBMatrix-class.R' 'DuckDBMatrix-utils.R'
        'createDimTables.R' 'rowDeviances.R' 'rowNnzs.R'
        'scanKeycols.R' 'writeCoordArray-duckdb.R'
        'writeCoordArray-generic.R' 'writeCoordArray-methods.R'
        'writeCoordArray-types.R'
Config/roxygen2/version: 8.1.0
Config/pak/sysreqs: cmake libicu-dev libssl-dev xz-utils zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-10-08 00:10:10 UTC
RemoteUrl: https://github.com/bioc/DuckDBArray
RemoteRef: HEAD
RemoteSha: 5ffeec68b8c616c9f4c82c3d22b782b763bc69f7
NeedsCompilation: no
Packaged: 2026-10-08 09:16:17 UTC; root
Author: Patrick Aboyoun [aut, cre],
  Genentech, Inc. [cph]
Maintainer: Patrick Aboyoun <aboyounp@gene.com>