Package: DiscoRhythm
Title: Interactive Workflow for Discovering Rhythmicity in Biological
        Data
Version: 1.29.0
Authors@R: c(
    person("Matthew", "Carlucci",
    email = "Matthew.Carlucci@camh.ca",
    role = c("aut", "cre")),
    person("Algimantas", "Kriščiūnas",
    email = "algimantas.krisciunas@gmc.vu.lt",
    role = c("aut")),
    person("Haohan", "Li",
    email = "Xavier.li@edu.uwaterloo.ca",
    role = c("aut")),
    person("Povilas", "Gibas",
    email = "povilas.gibas@bti.vu.lt",
    role = c("aut")),
    person("Karolis", "Koncevičius",
    email = "karolis.koncevicius@gmc.vu.lt",
    role = c("aut")),
    person("Art", "Petronis",
    email = "Art.Petronis@camh.ca",
    role = c("aut")),
    person("Gabriel", "Oh",
    email = "Gabriel.Oh@camh.ca",
    role = c("aut"))
    )
Description: Set of functions for estimation of cyclical
        characteristics, such as period, phase, amplitude, and
        statistical significance in large temporal datasets. Supporting
        functions are available for quality control, dimensionality
        reduction, spectral analysis, and analysis of experimental
        replicates. Contains a R Shiny web interface to execute all
        workflow steps.
Depends: R (>= 3.6.0)
License: GPL-3
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.1.1
VignetteBuilder: knitr
Imports: matrixTests, matrixStats, MetaCycle (>= 1.2.0), data.table,
        ggplot2, ggExtra, dplyr, broom, shiny, shinyBS,
        shinycssloaders, shinydashboard, shinyjs, BiocStyle, rmarkdown,
        knitr, kableExtra, magick, VennDiagram, UpSetR, heatmaply,
        viridis, plotly, DT, gridExtra, methods, stats,
        SummarizedExperiment, BiocGenerics, S4Vectors, zip, reshape2
Suggests: testthat
SystemRequirements: To generate html reports pandoc
        (http://pandoc.org/installing.html) is required.
biocViews: Software, TimeCourse, QualityControl, Visualization, GUI,
        PrincipalComponent
URL: https://github.com/matthewcarlucci/DiscoRhythm
BugReports: https://github.com/matthewcarlucci/DiscoRhythm/issues
Config/pak/sysreqs: cmake libfontconfig1-dev libfreetype6-dev
        libfribidi-dev make libharfbuzz-dev libmagick++-dev gsfonts
        libicu-dev libpng-dev libuv1-dev libxml2-dev libssl-dev
        zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-04-28 12:49:58 UTC
RemoteUrl: https://github.com/bioc/DiscoRhythm
RemoteRef: HEAD
RemoteSha: 1fc87d9bafadb68fd7de8a4c44fb597e71faf52e
NeedsCompilation: no
Packaged: 2026-07-04 05:42:11 UTC; root
Author: Matthew Carlucci [aut, cre],
  Algimantas Kriščiūnas [aut],
  Haohan Li [aut],
  Povilas Gibas [aut],
  Karolis Koncevičius [aut],
  Art Petronis [aut],
  Gabriel Oh [aut]
Maintainer: Matthew Carlucci <Matthew.Carlucci@camh.ca>