NEWS

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DegCre 0.99.16

• Added utils to DESCRIPTION

DegCre 0.99.15

• Updated to use R 4.4.0

• Added importFrom for grDevices and utils

• Fixed typos in help files

DegCre 0.99.14

BUG FIXES

• Added imported packages to DESCRIPTION

DegCre 0.99.13

• Numerous code style changes made to comply with Bioconductor standards.

• Updated to run require R 4.3.3

• Vignette style changed to Bioconductor

• Selective imports implemented

DegCre 0.99.12

BUG FIXES

• Fixed one more bad href in help files.

DegCre 0.99.11

BUG FIXES

• Fixed bad hrefs in help files.

DegCre 0.99.10

BUG FIXES

• Fixed example for runDegCre.

DegCre 0.99.9

BUG FIXES

• Fixed test functions to subset GRanges.

DegCre 0.99.8

BUG FIXES

• Fixed runnable examples to load GenomicRanges.

DegCre 0.99.7

BUG FIXES

• Changed test functions to run on chr1 only for efficiency.

DegCre 0.99.6

BUG FIXES

• Changed examples to run on chr1 for computational efficiency.

DegCre 0.99.4

BUG FIXES

• Fixed F to FALSE in example

DegCre 0.99.3

BUG FIXES

• Set all non-exported functions to not run examples.
• Fixed vignette code.

NEW FEATURES

• getAssocDistHits is now exported.

DegCre 0.99.2

BUG FIXES

• Fixed calcAUC.Rd to not run example.

DegCre 0.99.1

BUG FIXES

• Fixed calcBinomFDRperBin to give FDR = 1 for 0 assocProbs in top 10 CRE p-values.

DegCre 0.99.0

BUG FIXES

• Added missing unit test for optimizeAlphaDegCre

DegCre 0.3.0

NEW FEATURES

• Added unit tests for most functions.

BUG FIXES

• Fixed row names in plotDegCreAssocProbVsDist
• Changed left margin handling and arched plot color bar placement in plotBrowserDegCre
• Added internal keyword to un-exported functions.

DegCre 0.2.0

NEW FEATURES

• Added a NEWS file to track changes.
• Made numerous style changes to code in preparation for Bioconductor submission.