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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "DeeDeeExperiment" in publications use:'
type: software
license: MIT
title: 'DeeDeeExperiment: DeeDeeExperiment: An S4 Class for managing and exploring
  omics analysis results'
version: 1.3.0
doi: 10.1093/bioinformatics/btag157
identifiers:
- type: doi
  value: 10.32614/CRAN.package.DeeDeeExperiment
abstract: DeeDeeExperiment is an S4 class extending the SingleCellExperiment class,
  designed to integrate and manage omics analysis results. It introduces two dedicated
  slots to store Differential Expression Analysis (DEA) results and Functional Enrichment
  Analysis (FEA) results, providing a structured approach for downstream analysis.
authors:
- family-names: Abassi
  given-names: Najla
  email: abassi.nejla96@gmail.com
  orcid: https://orcid.org/0000-0001-8357-0938
- family-names: Schwarz
  given-names: Lea
  email: lea.schwarz@uni-mainz.de
  orcid: https://orcid.org/0000-0003-2554-0583
- family-names: Marini
  given-names: Federico
  email: marinif@uni-mainz.de
  orcid: https://orcid.org/0000-0003-3252-7758
preferred-citation:
  type: article
  title: 'DeeDeeExperiment: Building an infrastructure for integrating and managing
    omics data analysis results in R/Bioconductor'
  authors:
  - family-names: Abassi
    given-names: Najla
    email: abassi.nejla96@gmail.com
    orcid: https://orcid.org/0000-0001-8357-0938
  - family-names: Schwarz
    given-names: Lea
    email: lea.schwarz@uni-mainz.de
    orcid: https://orcid.org/0000-0003-2554-0583
  - family-names: Filippi
    given-names: Edoardo
  - family-names: Marini
    given-names: Federico
    email: marinif@uni-mainz.de
    orcid: https://orcid.org/0000-0003-3252-7758
  journal: Bioinformatics
  year: '2026'
  doi: 10.1093/bioinformatics/btag157
repository: https://bioc.r-universe.dev
repository-code: https://github.com/imbeimainz/DeeDeeExperiment
commit: 9bf542794ec216afcea72e63eb7a24b44a931e9a
url: https://github.com/imbeimainz/DeeDeeExperiment
date-released: '2026-04-28'
contact:
- family-names: Abassi
  given-names: Najla
  email: abassi.nejla96@gmail.com
  orcid: https://orcid.org/0000-0001-8357-0938