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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "DeconvoBuddies" in publications use:'
type: software
license: Artistic-2.0
title: 'DeconvoBuddies: Helper Functions for LIBD Deconvolution'
version: 1.5.0
doi: 10.18129/B9.bioc.DeconvoBuddies
identifiers:
- type: doi
  value: 10.32614/CRAN.package.DeconvoBuddies
abstract: Functions helpful for LIBD deconvolution project. Includes tools for marker
  finding with mean ratio, expression plotting, and plotting deconvolution results.
  Working to include DLPFC datasets.
authors:
- family-names: Huuki-Myers
  given-names: Louise
  email: lahuuki@gmail.com
  orcid: https://orcid.org/0000-0001-5148-3602
preferred-citation:
  type: manual
  title: 'DeconvoBuddies: a R/Bioconductor package with deconvolution helper functions'
  authors:
  - family-names: Huuki-Myers
    given-names: Louise A.
  - family-names: Maynard
    given-names: Kristen R.
  - family-names: Hicks
    given-names: Stephanie C.
  - family-names: Zandi
    given-names: Peter
  - family-names: Kleinman
    given-names: Joel E.
  - family-names: Hyde
    given-names: Tom M.
  - family-names: Goes
    given-names: Fernando S.
  - family-names: Collado-Torres
    given-names: Leonardo
  year: '2026'
  url: http://www.bioconductor.org/packages/DeconvoBuddies
  notes: https://github.com/LieberInstitute/DeconvoBuddies/DeconvoBuddies - R package
    version 1.5.0
  doi: 10.18129/B9.bioc.DeconvoBuddies
repository: https://bioc.r-universe.dev
repository-code: https://github.com/LieberInstitute/DeconvoBuddies
commit: 67f63c74ab2aa0c4bceaf7e680b35151be3aa746
url: https://github.com/LieberInstitute/DeconvoBuddies
date-released: '2026-04-15'
contact:
- family-names: Huuki-Myers
  given-names: Louise
  email: lahuuki@gmail.com
  orcid: https://orcid.org/0000-0001-5148-3602
references:
- type: article
  title: Benchmark of cellular deconvolution methods using a multi-assay dataset from
    postmortem human prefrontal cortex
  authors:
  - family-names: Huuki-Myers
    given-names: Louise A.
  - family-names: Montgomery
    given-names: Kelsey D.
  - family-names: Kwon
    given-names: Sang Ho
  - family-names: Cinquemani
    given-names: Sophia
  - family-names: Eagles
    given-names: Nicholas J.
  - family-names: Gonzalez-Padilla
    given-names: Daianna
  - family-names: Maden
    given-names: Sean K.
  - family-names: Kleinman
    given-names: Joel E.
  - family-names: Hyde
    given-names: Thomas M.
  - family-names: Hicks
    given-names: Stephanie C.
  - family-names: Maynard
    given-names: Kristen R.
  - family-names: Collado-Torres
    given-names: Leonardo
  year: '2025'
  journal: Genome Biol
  doi: 10.1186/s13059-025-03552-3
  url: https://doi.org/10.1186/s13059-025-03552-3