Package: DeSousa2013
Type: Package
Title: Poor prognosis colon cancer is defined by a molecularly distinct
        subtype and precursor lesion
Version: 1.49.0
Date: 2013-04-10
Author: Xin Wang <Xin.Wang@cruk.cam.ac.uk>
Maintainer: Xin Wang <Xin.Wang@cruk.cam.ac.uk>
Depends: R (>= 2.15),
Imports: affy, frma, frmaTools, hgu133plus2.db, hgu133plus2frmavecs,
        sva, rgl, ConsensusClusterPlus, cluster, siggenes, ROCR, pamr,
        survival, gplots, AnnotationDbi, Biobase
Description: This package reproduces the main pipeline to analyze the
        AMC-AJCCII-90 microarray data set in De Sousa et al. accepted
        by Nature Medicine in 2013.
License: Artistic-2.0
biocViews: CancerData, ColonCancerData, MicroarrayData
Collate: preprocessing.R consensusClustering.R featureSelection.R
        classification.R prognosis.R figures.R pipeline.R
LazyLoad: yes
Config/pak/sysreqs: cmake libfreetype6-dev libglu1-mesa-dev make
        texlive libpng-dev libuv1-dev libxml2-dev libgl1-mesa-dev
        libssl-dev zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-04-28 12:25:46 UTC
RemoteUrl: https://github.com/bioc/DeSousa2013
RemoteRef: HEAD
RemoteSha: f62b05530bd9b21c329b85ddf8bb6be3f139c72e
NeedsCompilation: no
Packaged: 2026-10-18 10:23:18 UTC; root