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# CITATION file created with {cffr} R package
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cff-version: 1.2.0
message: 'To cite package "Damsel" in publications use:'
type: software
license: MIT
title: 'Damsel: Damsel: an end to end analysis of DamID'
version: 1.1.0
abstract: Damsel provides an end to end analysis of DamID data. Damsel takes bam files
  from Dam-only control and fusion samples and counts the reads matching to each GATC
  region. edgeR is utilised to identify regions of enrichment in the fusion relative
  to the control. Enriched regions are combined into peaks, and are associated with
  nearby genes. Damsel allows for IGV style plots to be built as the results build,
  inspired by ggcoverage, and using the functionality and layering ability of ggplot2.
  Damsel also conducts gene ontology testing with bias correction through goseq, and
  future versions of Damsel will also incorporate motif enrichment analysis. Overall,
  Damsel is the first package allowing for an end to end analysis with visual capabilities.
  The goal of Damsel was to bring all the analysis into one place, and allow for exploratory
  analysis within R.
authors:
- family-names: Page
  given-names: Caitlin
  email: caitlin.page@petermac.org
  orcid: https://orcid.org/0009-0004-7949-8143
repository: https://bioc.r-universe.dev
repository-code: https://github.com/Oshlack/Damsel
url: https://github.com/Oshlack/Damsel
contact:
- family-names: Page
  given-names: Caitlin
  email: caitlin.page@petermac.org
  orcid: https://orcid.org/0009-0004-7949-8143