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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "DSS" in publications use:'
type: software
license: GPL-1.0-only
title: 'DSS: Dispersion shrinkage for sequencing data'
version: 2.53.0
doi: 10.1093/biostatistics/kxs033
identifiers:
- type: doi
  value: 10.32614/CRAN.package.DSS
abstract: DSS is an R library performing differntial analysis for count-based sequencing
  data. It detectes differentially expressed genes (DEGs) from RNA-seq, and differentially
  methylated loci or regions (DML/DMRs) from bisulfite sequencing (BS-seq). The core
  of DSS is a new dispersion shrinkage method for estimating the dispersion parameter
  from Gamma-Poisson or Beta-Binomial distributions.
authors:
- family-names: Wu
  given-names: Hao
  email: hao.wu@emory.edu
- family-names: Feng
  given-names: Hao
  email: hxf155@case.edu
preferred-citation:
  type: article
  title: A new shrinkage estimator for dispersion improves differential expression
    detection in RNA-seq data
  authors:
  - family-names: Wu
    given-names: Hao
    email: hao.wu@emory.edu
  - family-names: Wang
    given-names: Chi
  - family-names: Wu
    given-names: Zhijin
  year: '2013'
  journal: Biostatistics
  doi: 10.1093/biostatistics/kxs033
repository: https://bioc.r-universe.dev
commit: 22b05ef0bff3d78c956c7293e23efa07bdc4e27a
date-released: '2023-01-11'
contact:
- family-names: Wu
  given-names: Hao
  email: hao.wu@emory.edu
- family-names: Feng
  given-names: Hao
  email: hxf155@case.edu
references:
- type: article
  title: A bayesian hierarchical model to detect differentially methylated loci from
    single nucleotide resolution sequencing data.
  authors:
  - family-names: Feng
    given-names: Hao
  - family-names: Conneely
    given-names: Karen
  - family-names: Wu
    given-names: Hao
  year: '2014'
  journal: Nucleic acids research
  doi: 10.1093/nar/gku154
- type: article
  title: Detection of differentially methylated regions from whole-genome bisulfite
    sequencing data without replicates.
  authors:
  - family-names: Wu
    given-names: Hao
  - family-names: Xu
    given-names: Tianlei
  - family-names: Feng
    given-names: Hao
  - family-names: Chen
    given-names: Li
  - family-names: Li
    given-names: Ben
  - family-names: Yao
    given-names: Bing
  - family-names: Qin
    given-names: Zhaohui
  - family-names: Jin
    given-names: Peng
  - family-names: Conneely
    given-names: Karen
  year: '2015'
  journal: Nucleic acids research
  doi: 'doi: 10.1093/nar/gkv715'
- type: article
  title: Differential methylation analysis for BS-seq data under general experimental
    design
  authors:
  - family-names: Park
    given-names: Yongseok
  - family-names: Wu
    given-names: Hao
  year: '2016'
  journal: Bioinformatics
  doi: 10.1093/bioinformatics/btw026