Version: 0.99
Category: NEW FEATURES
Text: Initial release.

Version: 0.99-1
Text: Fixed a bug in newSeqCountSet in dealing with the input
        experimental designs.

Version: 0.99-1
Text: Fixed a bug in computing local FDR.

Version: 0.99-1
Text: Add options to model the relationship between dispersion and mean
        expression.

Version: 1.2.0-1
Text: Fixed a bug in computing local FDR.

Version: 1.2.0-1
Text: Change the way to deal with genes with all 0 counts. Now the FDRs
        for these genes are assigned as 0.

Version: 1.6.0
Text: Implemented methods for detecting differentially methylated loci
        (DML).

Version: 1.7.0
Text: Added functionalities for multiple factor experimental design.
        Currently edgeR functions are used for glm fitting and
        hypothesis testing.  DSS only provide functions for dispersion
        estimation.

Version: 2.0.0
Text: Implemented methods for detecting differentially methylated
        regions (DMR).

Version: 2.0.0
Text: Modified the algorithm for computing variances with smoothing.

Version: 2.0.0
Text: Add function to detect DML for general experimental design.

Version: 2.0.0
Text: Add function to detect DML for general experimental design.

Version: 2.5.0
Text: Modify the parallel computing part in DML testing. We now use the
        'mcapply' function in 'parallel' package to implement
        parallelization. Note that older version of DSS (<2.4x) used
        the 'bplapply' function in 'BiocParallel' package. However,
        that function somehow has significantly reduced performance in
        the new release (>1.25), so we switched to mcapply. A drawback
        is that the progress bar cannot be displayed under the
        paralelle computing setting.