Please go to https://yulab-smu.top/biomedical-knowledge-mining-book/ for the full vignette.
If you use DOSE in published research, please cite G. Yu (2015).
G Yu, LG Wang, GR Yan, QY He. DOSE: an R/Bioconductor package for Disease Ontology Semantic and Enrichment analysis. Bioinformatics 2015, 31(4):608-609. http://dx.doi.org/10.1093/bioinformatics/btu684.
If you have questions/issues, please post to Bioconductor support site and tag your post with DOSE.