Package: DOSE Type: Package Title: Disease Ontology Semantic and Enrichment analysis Version: 4.7.0 Authors@R: c( person(given = "Guangchuang", family = "Yu", email = "guangchuangyu@gmail.com", role = c("aut", "cre")), person(given = "Li-Gen", family = "Wang", email = "reeganwang020@gmail.com", role = "ctb"), person(given = "Vladislav", family = "Petyuk", email = "petyuk@gmail.com", role = "ctb"), person(given = "Giovanni", family = "Dall'Olio", email = "giovanni.dallolio@upf.edu", role = "ctb")) Maintainer: Guangchuang Yu Description: This package implements five methods proposed by Resnik, Schlicker, Jiang, Lin and Wang respectively for measuring semantic similarities among DO terms and gene products. Enrichment analyses including hypergeometric model and gene set enrichment analysis are also implemented for discovering disease associations of high-throughput biological data. Depends: R (>= 3.5.0) Imports: AnnotationDbi, enrichit (>= 0.0.4), ggplot2, GOSemSim (>= 2.37.1), methods, reshape2, utils, yulab.utils (> 0.2.2) Suggests: prettydoc, clusterProfiler, gson (>= 0.0.5), knitr, memoise, org.Hs.eg.db, rmarkdown, testthat VignetteBuilder: knitr ByteCompile: true License: Artistic-2.0 Encoding: UTF-8 URL: https://yulab-smu.top/contribution-knowledge-mining/ BugReports: https://github.com/GuangchuangYu/DOSE/issues Packaged: 2026-05-29 10:30:59 UTC; root biocViews: Annotation, Visualization, MultipleComparison, GeneSetEnrichment, Pathways, Software RoxygenNote: 7.3.3 Config/pak/sysreqs: cmake make libicu-dev libpng-dev libuv1-dev libssl-dev zlib1g-dev Repository: https://bioc.r-universe.dev Date/Publication: 2026-04-28 12:35:30 UTC RemoteUrl: https://github.com/bioc/DOSE RemoteRef: HEAD RemoteSha: 0f4f367d08fca8f978ace7ccf3b6fc12379205df NeedsCompilation: no Author: Guangchuang Yu [aut, cre], Li-Gen Wang [ctb], Vladislav Petyuk [ctb], Giovanni Dall'Olio [ctb]