# --------------------------------------------
# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "DNAshapeR" in publications use:'
type: software
license: GPL-2.0-only
title: 'DNAshapeR: High-throughput prediction of DNA shape features'
version: 1.33.0
doi: 10.1093/bioinformatics/btv735
abstract: DNAhapeR is an R/BioConductor package for ultra-fast, high-throughput predictions
  of DNA shape features. The package allows to predict, visualize and encode DNA shape
  features for statistical learning.
authors:
- family-names: Chiu
  given-names: Tsu-Pei
  email: tsupeich@usc.edu
- family-names: Comoglio
  given-names: Federico
preferred-citation:
  type: article
  title: 'DNAshapeR: an R/Bioconductor package for DNA shape prediction and feature
    encoding'
  authors:
  - family-names: Chiu
    given-names: TP
  - family-names: Comoglio
    given-names: F
  - family-names: Zhou
    given-names: T
  - family-names: Yang
    given-names: L
  - family-names: Paro
    given-names: R
  - family-names: Rohs
    given-names: R
  year: '2016'
  journal: Bioinformatics
  volume: '32'
  doi: 10.1093/bioinformatics/btv735
  start: 1211-1213
repository: https://bioc.r-universe.dev
date-released: '2018-06-08'
contact:
- family-names: Chiu
  given-names: Tsu-Pei
  email: tsupeich@usc.edu
references:
- type: article
  title: Genome-wide prediction of minor-groove electrostatic potential enables biophysical
    modeling of protein-DNA binding
  authors:
  - family-names: Chiu
    given-names: TP
  - family-names: Rao
    given-names: S
  - family-names: Mann
    given-names: RS
  - family-names: Honig
    given-names: B
  - family-names: Rohs
    given-names: R
  year: '2017'
  journal: Nucleic Acids Res.
  volume: 45(21)
  doi: 10.1093/nar/gkx915
  url: https://academic.oup.com/nar/article-lookup/doi/10.1093/nar/gkx915
  start: 12565-12576
- type: article
  title: Expanding the repertoire of DNA shape features for genome-scale studies of
    transcription factor binding
  authors:
  - family-names: Li
    given-names: J
  - family-names: Sagendorf
    given-names: JM
  - family-names: Chiu
    given-names: TP
  - family-names: Pasi
    given-names: M
  - family-names: Perez
    given-names: A
  - family-names: Rohs
    given-names: R
  year: '2017'
  journal: Nucleic Acids Res.
  volume: 45(22)
  doi: 10.1093/nar/gkx1145
  url: https://academic.oup.com/nar/article-lookup/doi/10.1093/nar/gkx1145
  start: 12877-12887
- type: article
  title: Systematic prediction of DNA shape changes due to CpG methylation explains
    epigenetic effects on protein-DNA binding.
  authors:
  - family-names: Rao
    given-names: S
  - family-names: Chiu
    given-names: TP
  - family-names: Kribelbauer
    given-names: JF
  - family-names: Mann
    given-names: RS
  - family-names: Bussemaker
    given-names: HJ
  - family-names: Rohs
    given-names: R
  year: '2018'
  journal: Epigenetics Chromatin
  volume: '11:6'
  doi: 10.1186/s13072-018-0174-4
  url: https://epigeneticsandchromatin.biomedcentral.com/articles/10.1186/s13072-018-0174-4