T.P. Chiu*, F. Comoglio*, T. Zhou, L. Yang, R. Paro, and R. Rohs DNAshapeR: an R/Bioconductor package for DNA shape prediction and feature encoding. Bioinformatics 2016;32:1211-1213.

T.P. Chiu, S. Rao, R.S. Mann, B. Honig, and R. Rohs Genome-wide prediction of minor-groove electrostatic potential enables biophysical modeling of protein-DNA binding. Nucleic Acids Res. 2017;45(21):12565-12576.

J. Li, J.M. Sagendorf, T.P. Chiu, M. Pasi, A. Perez, and R. Rohs Expanding the repertoire of DNA shape features for genome-scale studies of transcription factor binding. Nucleic Acids Res. 2017;15;45(22):12877-12887.

S. Rao, T.P. Chiu, J.F. Kribelbauer, R.S. Mann, H.J. Bussemaker*, and R. Rohs Systematic prediction of DNA shape changes due to CpG methylation explains epigenetic effects on protein-DNA binding Epigenetics Chromatin 2018;11,6.

Corresponding BibTeX entries:

  @Article{,
    title = {DNAshapeR: an R/Bioconductor package for DNA shape
      prediction and feature encoding},
    author = {TP Chiu and F Comoglio and T Zhou and L Yang and R Paro
      and R Rohs},
    year = {2016},
    journal = {Bioinformatics},
    volume = {32},
    pages = {1211-1213},
    doi = {10.1093/bioinformatics/btv735},
  }

  @Article{,
    title = {Genome-wide prediction of minor-groove electrostatic
      potential enables biophysical modeling of protein-DNA binding},
    author = {TP Chiu and S Rao and RS Mann and B Honig and R Rohs},
    year = {2017},
    journal = {Nucleic Acids Res.},
    volume = {45(21)},
    pages = {12565-12576},
    doi = {10.1093/nar/gkx915},
    url =
      {https://academic.oup.com/nar/article-lookup/doi/10.1093/nar/gkx915},
  }

  @Article{,
    title = {Expanding the repertoire of DNA shape features for
      genome-scale studies of transcription factor binding},
    author = {J Li and JM Sagendorf and TP Chiu and M Pasi and A Perez
      and R Rohs},
    year = {2017},
    journal = {Nucleic Acids Res.},
    volume = {45(22)},
    pages = {12877-12887},
    doi = {10.1093/nar/gkx1145},
    url =
      {https://academic.oup.com/nar/article-lookup/doi/10.1093/nar/gkx1145},
  }

  @Article{,
    title = {Systematic prediction of DNA shape changes due to CpG
      methylation explains epigenetic effects on protein-DNA binding.},
    author = {S Rao and TP Chiu and JF Kribelbauer and RS Mann and HJ
      Bussemaker and R Rohs},
    year = {2018},
    journal = {Epigenetics Chromatin},
    volume = {11:6},
    doi = {10.1186/s13072-018-0174-4},
    url =
      {https://epigeneticsandchromatin.biomedcentral.com/articles/10.1186/s13072-018-0174-4},
  }