NEWS

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DNAfusion 1.2.0

• Added introns_ALK_EML4()
• Added find_variants()
• Updated break_position_depth()
• Updated break_position()
• Refined EML4_ALK_detection()
• Updated vignette to include new functions
• Cleaned functions for Bioconductor 3.17 release

DNAfusion 1.1.1

• Updated example files to include ALK reads

DNAfusion 1.1.0

• Updated DESCRIPTION

DNAfusion 1.0.0

• Bioconductor 3.16 release

DNAfusion 0.99.3

• Updated DESCRIPTION

DNAfusion 0.99.2

• Review from Bioconductor

DNAfusion 0.99.1

• Changed the output of EML4_ALK_detection() from data.frame to GAlignments object
• Adjusted the other functions, vignettes, tests and man accordingly

DNAfusion 0.99.0

• DNAfusion takes BAM file as input and identifies EML4-ALK gene fusions
• Submitted to Bioconductor.