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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "DMRScan" in publications use:'
type: software
license: GPL-3.0-only
title: 'DMRScan: Detection of Differentially Methylated Regions'
version: 1.27.0
identifiers:
- type: doi
  value: 10.32614/CRAN.package.DMRScan
abstract: 'This package detects significant differentially methylated regions (for
  both qualitative and quantitative traits), using a scan statistic with underlying
  Poisson heuristics. The scan statistic will depend on a sequence of window sizes
  (# of CpGs within each window) and on a threshold for each window size. This threshold
  can be calculated by three different means: i) analytically using Siegmund et.al
  (2012) solution (preferred), ii) an important sampling as suggested by Zhang (2008),
  and a iii) full MCMC modeling of the data, choosing between a number of different
  options for modeling the dependency between each CpG.'
authors:
- family-names: Page
  given-names: CM
  email: page.ntnu@gmail.com
- family-names: Vos
  given-names: L
  email: Linda.Vos@Kreftregisteret.no
- family-names: Andreassen
  given-names: BK
  email: Bettina.Kulle.Andreassen@Kreftregisteret.no
preferred-citation:
  type: article
  title: Assessing Genome-Wide Significance for the Detection of Differentially Methylated
    Regions
  authors:
  - family-names: Page
    given-names: Christian M
  - family-names: Vos
    given-names: Linda
  - family-names: Rounge
    given-names: Trine B
  - family-names: Harbo
    given-names: Hanne F
  - family-names: Andreassen
    given-names: Bettina K
  year: '2018'
  journal: SAGMB
repository: https://bioc.r-universe.dev
repository-code: https://github.com/christpa/DMRScan
commit: c387d957d99d78516f36e73996cfadabdb868619
url: https://github.com/christpa/DMRScan
contact:
- family-names: Page
  given-names: CM
  email: page.ntnu@gmail.com