NEWS

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DMCHMM 1.11.1

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CHANGES

• Parallel reading is added to readBismark-method.

BUG FIX

• Some bugs are fixed in methHMMCMC-method to avoid creating infinity.

DMCHMM 1.9.2

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CHANGES SINCE LAST RELEASE

• Made compatible with R 4 following changes in some codes in R.
• Citation is updated.

DMCHMM 1.3.1

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CHANGES AND BUG FIX

• A new citation is added.
• Several bugs are fixed.

DMCHMM 0.99.17

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CHANGES SINCE LAST RELEASE

• A new function, compareDMCs() is added for plotting DMCs and average predicted methylation for for group comparison.
• The manhattanDMCs() function is modified to plot regions of interests.

DMCHMM 0.99.16

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CHANGES SINCE LAST RELEASE

• The function findDMCs() is fixed for memory management.
• The function methEM() is fixed for creating NaN in computing binomial probabilities.

DMCHMM 0.99.15

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CHANGES SINCE LAST RELEASE

• An option is added to findDMC that lets the user enters a function to calculate weights for GLM using the variances obtianed from MCMC.

DMCHMM 0.99.14

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CHANGES SINCE LAST RELEASE

• Several issues are fixed.
• Some modification are done to expedite the speed of processes.
• Instead of the parallel package, the BioParallel package is used.

DMCHMM 0.99.9

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CHANGES SINCE LAST RELEASE

• Some parameters in examples are changed to make the running time faster.
• The BSData-method is changed to cBSData-method.
• The BSDMCs-method is changed to cBSDMCs-method.

DMCHMM 0.99.0

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CHANGES SINCE LAST RELEASE

• We have refined some of the codes to speed up the running the package.