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# CITATION file created with {cffr} R package
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cff-version: 1.2.0
message: 'To cite package "DEsubs" in publications use:'
type: software
license: GPL-3.0-only
title: 'DEsubs: DEsubs: an R package for flexible identification of differentially
  expressed subpathways using RNA-seq expression experiments'
version: 1.31.0
abstract: DEsubs is a network-based systems biology package that extracts disease-perturbed
  subpathways within a pathway network as recorded by RNA-seq experiments. It contains
  an extensive and customizable framework covering a broad range of operation modes
  at all stages of the subpathway analysis, enabling a case-specific approach. The
  operation modes refer to the pathway network construction and processing, the subpathway
  extraction, visualization and enrichment analysis with regard to various biological
  and pharmacological features. Its capabilities render it a tool-guide for both the
  modeler and experimentalist for the identification of more robust systems-level
  biomarkers for complex diseases.
authors:
- family-names: Vrahatis
  given-names: Aristidis G.
  email: agvrahatis@upatras.gr
- family-names: Balomenos
  given-names: Panos
  email: balomenos@upatras.gr
preferred-citation:
  type: article
  title: 'DEsubs: an R package for flexible identification of differentially expressed
    subpathways using RNA-seq experiments'
  authors:
  - family-names: Vrahatis
    given-names: Aristidis G
  - family-names: Balomenos
    given-names: Panos
    email: balomenos@upatras.gr
  - family-names: Tsakalidis
    given-names: Athanasios
  - family-names: Bezerianos
    given-names: Anastasios
  journal: Bioinformatics
  year: '2016'
  start: btw544
repository: https://bioc.r-universe.dev
date-released: '2017-07-23'
contact:
- family-names: Vrahatis
  given-names: Aristidis G.
  email: agvrahatis@upatras.gr
- family-names: Balomenos
  given-names: Panos
  email: balomenos@upatras.gr