Changes in version 0.99.3 o Updated package metadata for Bioconductor resubmission. o Added .DS_Store to .gitignore and cleaned temporary build artifacts. Changes in version 0.99.2 o Updated NEWS for the latest Bioconductor resubmission version. Changes in version 0.99.1 o Added Bioconductor-ready vignette examples for bulk RNA-seq, microbiome, and single-cell workflows. o Expanded unit test coverage across core methods, enhancers, normalization, CCT utilities, and internal helper functions. o Added package-level documentation and improved reviewer-requested attribution for incorporated Robseq and Tweedieverse code. Changes in version 0.99.0 o Initial Bioconductor submission. o Added MultiAssayExperiment input support. o Added conditional backend support for differential analysis methods.