To cite package 'DART' in publications use: Jiao Y, Lawler K, Patel GS, Purushotham A, Jones AF et al. (2011) DART: Denoising Algorithm based on Relevance network Topology improves molecular pathway activity inference. BMC Bioinformatics, 12:403 A BibTeX entry for LaTeX users is @Article{, title = {DART: Denoising Algorithm based on Relevance network Topology improves molecular pathway activity inference.}, author = {Y Jiao and K Lawler and GS Patel and A Purushotham and et al.}, doi = {10.1186/1471-2105-12-403}, journal = {BMC Bioinformatics}, pages = {403}, url = {http://www.biomedcentral.com/1471-2105/12/403}, volume = {12}, year = {2011}, } Teschendorff AE, Li L, Yang Z. (2015) Denoising perturbation signatures reveals an actionable AKT-signaling gene module underlying a poor clinical outcome in endocrine treated ER+ breast cancer. Genome Biology 16:61 A BibTeX entry for LaTeX users is @Article{, title = {Denoising perturbation signatures reveals an actionable AKT-signaling gene module underlying a poor clinical outcome in endocrine treated ER+ breast cancer.}, author = {AE Teschendorff and L Li and Z Yang}, doi = {10.1186/s13059-015-0630-4}, journal = {Genome Biology}, pages = {61}, url = {http://genomebiology.com/2015/16/1/61}, volume = {16}, year = {2015}, } Teschendorff AE, Gomez S, Arenas A, El-Ashry D, Schmidt M, et al. (2010) Improved prognostic classification of breast cancer defined by antagonistic activation patterns of immune response pathway modules. BMC Cancer 10:604 A BibTeX entry for LaTeX users is @Article{, note = {Additional citation for DART methods.}, title = {Improved prognostic classification of breast cancer defined by antagonistic activation patterns of immune response pathway modules}, author = {AE Teschendorff and S Gomez and A Arenas and D El-Ashry and M Schmidt and et al.}, journal = {BMC Cancer}, pages = {604}, url = {http://www.biomedcentral.com/1471-2407/10/604}, volume = {10}, year = {2010}, }