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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "DART" in publications use:'
type: software
license: GPL-2.0-only
title: 'DART: Denoising Algorithm based on Relevance network Topology'
version: 1.53.0
doi: 10.1186/1471-2105-12-403
abstract: Denoising Algorithm based on Relevance network Topology (DART) is an algorithm
  designed to evaluate the consistency of prior information molecular signatures (e.g
  in-vitro perturbation expression signatures) in independent molecular data (e.g
  gene expression data sets). If consistent, a pruning network strategy is then used
  to infer the activation status of the molecular signature in individual samples.
authors:
- family-names: Zheng
  given-names: Charles Shijie
  email: charles_zheng@live.com
- family-names: Jiao
  given-names: Yan
- family-names: Lawler
  given-names: Katherine
- family-names: Teschendorff
  given-names: Andrew E
- family-names: Zheng
  given-names: Charles Shijie
preferred-citation:
  type: article
  title: 'DART: Denoising Algorithm based on Relevance network Topology improves molecular
    pathway activity inference.'
  authors:
  - family-names: Jiao
    given-names: 'Y'
  - family-names: Lawler
    given-names: K
  - family-names: Patel
    given-names: GS
  - family-names: Purushotham
    given-names: A
  - family-names: al.
    given-names: et
  doi: 10.1186/1471-2105-12-403
  journal: BMC Bioinformatics
  url: http://www.biomedcentral.com/1471-2105/12/403
  volume: '12'
  year: '2011'
  start: '403'
repository: https://bioc.r-universe.dev
date-released: '2015-05-23'
contact:
- family-names: Zheng
  given-names: Charles Shijie
  email: charles_zheng@live.com
references:
- type: article
  title: Denoising perturbation signatures reveals an actionable AKT-signaling gene
    module underlying a poor clinical outcome in endocrine treated ER+ breast cancer.
  authors:
  - family-names: Teschendorff
    given-names: AE
  - family-names: Li
    given-names: L
  - family-names: Yang
    given-names: Z
  doi: 10.1186/s13059-015-0630-4
  journal: Genome Biology
  url: http://genomebiology.com/2015/16/1/61
  volume: '16'
  year: '2015'
  start: '61'
- type: article
  title: Improved prognostic classification of breast cancer defined by antagonistic
    activation patterns of immune response pathway modules
  authors:
  - family-names: Teschendorff
    given-names: AE
  - family-names: Gomez
    given-names: S
  - family-names: Arenas
    given-names: A
  - family-names: El-Ashry
    given-names: D
  - family-names: Schmidt
    given-names: M
  - family-names: al.
    given-names: et
  notes: Additional citation for DART methods.
  journal: BMC Cancer
  url: http://www.biomedcentral.com/1471-2407/10/604
  volume: '10'
  year: '2010'
  start: '604'