To cite package 'DART' in publications use:

Jiao Y, Lawler K, Patel GS, Purushotham A, Jones AF et al. (2011) DART: Denoising Algorithm based on Relevance network Topology improves molecular pathway activity inference. BMC Bioinformatics, 12:403

Teschendorff AE, Li L, Yang Z. (2015) Denoising perturbation signatures reveals an actionable AKT-signaling gene module underlying a poor clinical outcome in endocrine treated ER+ breast cancer. Genome Biology 16:61

Teschendorff AE, Gomez S, Arenas A, El-Ashry D, Schmidt M, et al. (2010) Improved prognostic classification of breast cancer defined by antagonistic activation patterns of immune response pathway modules. BMC Cancer 10:604

Corresponding BibTeX entries:

  @Article{,
    title = {DART: Denoising Algorithm based on Relevance network
      Topology improves molecular pathway activity inference.},
    author = {Y Jiao and K Lawler and GS Patel and A Purushotham and et
      al.},
    doi = {10.1186/1471-2105-12-403},
    journal = {BMC Bioinformatics},
    pages = {403},
    url = {http://www.biomedcentral.com/1471-2105/12/403},
    volume = {12},
    year = {2011},
  }

  @Article{,
    title = {Denoising perturbation signatures reveals an actionable
      AKT-signaling gene module underlying a poor clinical outcome in
      endocrine treated ER+ breast cancer.},
    author = {AE Teschendorff and L Li and Z Yang},
    doi = {10.1186/s13059-015-0630-4},
    journal = {Genome Biology},
    pages = {61},
    url = {http://genomebiology.com/2015/16/1/61},
    volume = {16},
    year = {2015},
  }

  @Article{,
    note = {Additional citation for DART methods.},
    title = {Improved prognostic classification of breast cancer
      defined by antagonistic activation patterns of immune response
      pathway modules},
    author = {AE Teschendorff and S Gomez and A Arenas and D El-Ashry
      and M Schmidt and et al.},
    journal = {BMC Cancer},
    pages = {604},
    url = {http://www.biomedcentral.com/1471-2407/10/604},
    volume = {10},
    year = {2010},
  }