NEWS

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DAMEfinder 1.3.1

• change cmdscale.out for eigen.vectors in methyl_MDS_plot

DAMEfinder 1.3.0

• update with new Bioc version

DAMEfinder 1.1.4

• Add Z score as an alternative ASMsnp score

DAMEfinder 1.1.3

• Add CITATION

• Remove "bad chromosome" filtering

• Argument 'build' in extract_bams() removed

DAMEfinder 1.1.2

• Remove vcfR dependency and add VariantAnnotation

DAMEfinder 1.1.1

• Fix typo in split_bams that excluded some chromosomes

DAMEfinder 0.99.3

• Change some files to other folders

DAMEfinder 0.99.2

• Fix spacing (ggplot code looks funky now)

• Remove make_bigwigs func

• Fix examples for plotting functions

DAMEfinder 0.99.1

• Fix description file

DAMEfinder 0.99.0

• First version submitted to Bioconductor

DAMEfinder 0.2.0

• New SNP-based ASM score. Includes VCF and BAM files as input.

• New p-value assignment methods.

• New plotting functions for MDS and Methyl-circle-plots.

DAMEfinder 0.1.13

• Last version before S.Orjuela started working on it.